Extracts metabolites from a GPML pathway downloaded from WikiPathways

Created: 2013-08-11 21:10:39 Last updated: 2013-08-11 21:12:31

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This Groovy scripts starts with a WikiPathways identifier, downloads the GPML, and uses the Groovy XmlParser to extract metabolites for which it reports the label, and if available, database and identifier.

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Bioclipse Scripting Language

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Egon Willighagen

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Extracts metabolites from a GPML pathway downloaded from WikiPathways

Created by Egon Willighagen on Sunday 11 August 2013 21:10:39 (UTC)

Last edited by Egon Willighagen on Sunday 11 August 2013 21:12:31 (UTC)

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