Author's collaborators according to pubmed

Script

String url = "http://atlas.bio2rdf.org/sparql?default-graph-uri=&query=SELECT+distinct+%3Fs2%0D%0AWHERE+{%0D%0A++%3Fs+%3Fp+%3Fo+.+%0D%0A++%3Fo+bif%3Acontains+%22"+name+"%22+.%0D%0A++%3Fs2+%3Fp2+%3Fs+.%0D%0A}&format=text%2Fhtml&debug=on";

URL inputURL = null;
if (base != void) {
  inputURL = new URL(new URL(base), url);
}
else {
  inputURL = new URL(url);
}
URLConnection con = inputURL.openConnection();
InputStream in = con.getInputStream();

InputStreamReader isr = new InputStreamReader(in);
Reader inReader = new BufferedReader(isr);

StringBuffer buf = new StringBuffer();
int ch;
while ((ch = inReader.read()) > -1) {
  buf.append((char)ch);
}
inReader.close();
html = buf.toString();

html = html.replace("pubmed.bio2rdf","bio2rdf");

Script

filteredlist = new ArrayList();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
	String item = (String) i.next();
	if (item.matches(regex)) {
		filteredlist.add(item);
	}
}

Value

Script

String url = "http://localhost:8890/sparql?default-graph-uri=&should-sponge=&query=SELECT+%3Fcreator%2C+count(*)%0D%0AWHERE+{%0D%0A++%3Fs1+%3Fp1+%3Chttp%3A%2F%2Fbio2rdf.org%2Fbibtex%23Article%3E+.+%0D%0A++%3Fs1+%3Fp2+%3Fo2+.%0D%0A++FILTER(+regex(%3Fo2%2C+%22"+name+"%22))%0D%0A++%3Fs1+%3Chttp%3A%2F%2Fpurl.org%2Fdc%2Felements%2F1.1%2Fcreator%3E+%3Fcreator+.%0D%0A}%0D%0AORDER+BY+DESC(count(*))&format=text%2Fhtml&debug=on";

URL inputURL = null;
if (base != void) {
  inputURL = new URL(new URL(base), url);
}
else {
  inputURL = new URL(url);
}
URLConnection con = inputURL.openConnection();
InputStream in = con.getInputStream();

InputStreamReader isr = new InputStreamReader(in);
Reader inReader = new BufferedReader(isr);

StringBuffer buf = new StringBuffer();
int ch;
while ((ch = inReader.read()) > -1) {
  buf.append((char)ch);
}
inReader.close();
contents = buf.toString();


//String NEWLINE = System.getProperty("line.separator");
//
//URL inputURL = null;
//if (base != void) {
//	inputURL = new URL(new URL(base), url);
//} else {
//	inputURL = new URL(url);
//}
//StringBuffer result = new StringBuffer();
//BufferedReader reader = new BufferedReader(new InputStreamReader(inputURL.openStream()));
//String line = null;
//while ((line = reader.readLine()) != null) {
//	result.append(line);
//	result.append(NEWLINE);
//}
//
//contents = result.toString();