Retrieve Protein Sequence and BLAST

Created: 2007-11-09 10:41:12 Last updated: 2008-06-05 15:18:07

Retrieves a protein sequence in Fasta format from Genbank and then performs a BLAST on that sequence

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Information Workflow Type

Taverna 1

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Katy Wolstencroft

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Katy Wolstencroft

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Retrieve Protein Sequence and BLAST

Created by Katy Wolstencroft on Friday 09 November 2007 10:41:12 (UTC)

Last edited by Katy Wolstencroft on Thursday 05 June 2008 15:18:07 (UTC)

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Perform a sequence similarity search using the BLAST algorithm through the DDBJ web service. Example input for this service are given below. query: >MySequence MATDDSIIVLDDDDEDEAAAQPGPSNLPPNPASTGPGPGLSQQATGLSEPRVDGGSS NSGSRKCYKLDNEKLFEEFLELCKTETSDHPEVVPFLHKLQQRAQSVFLASAEFCNIL SRVLARSRKRPAKIYVYINELCTVLKAHSIKKKLNLAPAASTTSEASGPNPPTEPPSDLT NTENTASEASRTRGSRRQIQRLEQLLALYVAEIRRLQEKELDLSELDDPDSSYLQEAR LKRKLIRLFGRLCELKDCSSLTGRVIEQRIPYRGTRYPEVNRRIERLINKPGLDTFPDY GDVLRAVEKAATRHSLGLP...

Created: 2007-10-03 | Last updated: 2009-12-03