Workflows

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Workflow Get Bioentity from Organism (1)

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GeNS workflow that lists the identifiers corresponding to a given species and data type. For instance, list all OMIM associated with the human species. Disclaimer: This workflow is just a simple example designed for academic purposes.

Created: 2009-09-08 | Last updated: 2009-09-14

Credits: User Pedro Lopes

Workflow Sample Entity Converter (1)

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 Disclaimer: This workflow is just a simple example designed for academic purposes.

Created: 2009-09-08 | Last updated: 2009-09-14

Credits: User Pedro Lopes

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Workflow Workflow for provenance testing -- example 1 (1)

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this simply includes a few beanshells and is used for testing our provenance capture and query algorithms

Created: 2009-09-10

Credits: User Paolo

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Workflow example of a 2-deep nested workflow (1)

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used for testing provenance as well as experimenting with Scufl2 specfications

Created: 2009-09-11

Credits: User Paolo

Workflow EBI_InterProScan_T2 (1)

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Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default. InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the s...

Created: 2009-09-11

Credits: User Steve Crouch User Stian Soiland-Reyes

Workflow Search GeNS BioEntity (1)

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 This workflow returns a list of know associations between an organism and a data type. All identifiers correspond to GeNS database identifiers.    Disclaimer: This workflow is just a simple example designed for academic purposes.

Created: 2009-09-15 | Last updated: 2009-09-15

Credits: User Pedro Lopes

Workflow Search GeNS DataType (1)

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 This workflow returns a single GeNS identifier corresponding to the given data type.    Disclaimer: This workflow is just a simple example designed for academic purposes.

Created: 2009-09-15

Credits: User Pedro Lopes

Workflow Search GeNS Organism (1)

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 This workflow returns a GeNS identifier for a given organism.    Disclaimer: This workflow is just a simple example designed for academic purposes.

Created: 2009-09-15

Credits: User Pedro Lopes

Workflow BioMart and Emboss Analysis (T2) (1)

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This is the Taverna 2 version of the Biomart and Emboss Analysis workflow http://www.myexperiment.org/workflows/158   Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned. Previous versions of this workflow only returned sequences with an ID mapped to a MIM_morbid_accession. This was primarily to reduce the numbe...

Created: 2009-09-15

Credits: User Katy Wolstencroft User Alan Williams

Attributions: Workflow BiomartAndEMBOSSAnalysis

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Workflow Example 3 (1)

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Search in the Datenbank SWISS the Sequence 1220173

Created: 2009-10-20

Credits: User Ruben

Workflow sample workflow (1)

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No description

Created: 2009-10-21 | Last updated: 2009-10-21

Credits: User Vikramkumra Network-member NIU-CSCI647

Workflow What is [query] from NCBI, EBI, UniProt an... (2)

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test values: query = paget disease query = pdb4 query = hk1 query = h1n1 This rdfiser query those four federated search services EB-Eye, KEGG LinkDB, NCBI Entrez and UniProt knowledgebase. RDF triples are returned for search statistics with Bio2RDF normalised URIs. This workflow should be used responsibly because it can generate high load at the provider resources. test values: query = paget disease query = pdb4 query = hk1 query = h1n1 query = paget disease query = pdb4 query = hk1 que...

Created: 2009-11-03 | Last updated: 2009-11-03

Credits: User Francois Belleau

Workflow find events in xray and radio (7)

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instruments: hessiEC, phoenix2 attention: hessi name has changed!

Created: 2010-03-16 | Last updated: 2010-03-16

Credits: User Anja Le Blanc

Workflow getTimololFromMassBank (1)

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This workflow will retrieve a peaklist from a fixed entry (Timolol) from the MassBank spectral library. Note, the API is still in alpha, as of 10.11.2009.  

Created: 2009-11-10 | Last updated: 2009-11-10

Credits: User http://sneumann.pip.verisignlabs.com/

Workflow blastp using the MRS system (1)

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This blastp workflow uses the blast service of MRS (http://mrs.cmbi.ru.nl). Inputs are a sequence (only amino acids, not a fasta sequence) and a database. Databases that can be used are "sprot", "uniprot", "trembl", "pdb", "refseq", "ipi" and "gpcrdb".

Created: 2009-11-10

Credits: User Bas Vroling

Workflow Beanshell Test (1)

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A test workflow that uses beanshell services

Created: 2009-11-10

Workflow retrieving solar monitor urls for votable ... (1)

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No description

Created: 2009-11-12 | Last updated: 2009-11-12

Credits: User Anja Le Blanc

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Workflow workflow1 (1)

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blast dando o ID de uma proteinablast dando o ID de uma proteina ex: database is ‘SWISS’, for program, ‘blastp’, and for ID ‘1220173blast dando o ID de uma proteina ex: database is SWISS’, for program, blastp, and for ID 1220173

Created: 2009-11-16

Credits: User Jorgep

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Workflow workflow1 (1)

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blast dando o ID de uma proteinablast dando o ID de uma proteina ex: database is ‘SWISS’, for program, ‘blastp’, and for ID ‘1220173blast dando o ID de uma proteina ex: database is SWISS’, for program, blastp, and for ID 1220173

Created: 2009-11-16

Credits: User Susaninha

Uploader

Workflow Ex (1)

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Ex of exercise

Created: 2009-11-16

Credits: User Mventosa

Attributions: Workflow EBI_InterProScan for Taverna 2

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