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Tag: database Licence: by-sa
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Project Biovel

Blob TEST DEMO METDATA + FORESEE FOR Biome-BGC, HHS, 190...

Created: 2014-05-26 06:05:43

Credits: User Ferenc HORVATH

License: Creative Commons Attribution-Share Alike 3.0 Unported License

TEST DEMO METDATA (daily meteorology data) file for Biome-BGC simulation runs, HHS (Hegyhátsál, HU), 1901-2100, predictions is came from FORESEE CLM regional model output

File type: Trident (Package)

Comments: 0 | Viewed: 22 times | Downloaded: 15 times

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Blob fits/votable to SQL converter

Created: 2013-12-05 11:53:20 | Last updated: 2013-12-19 10:24:00

Credits: User Alexey Mints

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Simple python script to convert Fits file or VO-table to SQL database.Optimized for PostgreSQL, but easily modified for anything else.So far only SQL-script preparation is done. You can execute the output Yourself.

File type: text/x-python

Comments: 0 | Viewed: 40 times | Downloaded: 36 times

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Workflow PostgresSQL/PostGIS Database for Historians (1)

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This diagram depicts the steps that the 'Mapping the Jewish Communities of the Byzantine Empire' project took to populate the project's PostgreSQL/PostGIS database. 

Created: 2013-11-27 | Last updated: 2013-11-27

Credits: User Gethin Rees

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Workflow showDatasetsGenomic (1)

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Shows all the datasets available in the Nencki Genomics Database (www.nencki-genomics.org). Click 'Use examples' to see all the datasets, separated into datasets of TFBS motifs, and all the remaining datasets (areas), the latter including data from Ensembl funcgen and (thus) Encode. Publication doi: 10.1093/database/bat069

Created: 2013-10-07

Credits: User mdabr

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Workflow plotGenomic (1)

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This workflow returns a graphical representation of selected Nencki Genomics Database (www.nencki-genomics.org) content in the ± 10 kb flank of the transcription start site of a chosen gene. More precisely, it returns instances of selected area types, and instances of selected motif types that intersect any of the returned area instances. The results are returned as three files: a pdf file with the plot, and two tab-separated files with the details of areas and motifs shown in the plot. P...

Created: 2013-10-07

Credits: User mdabr

Workflow Match concept profiles with predefined set (2)

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Purpose of workflow: The workflow can be used to match a set of concept profiles with predefined set of concept profiles. Result: A list of concepts ordered by their match to the query concept profiles.

Created: 2013-02-05 | Last updated: 2014-07-14

Credits: User Kristina Hettne User Marco Roos User Reinout van Schouwen Network-member BioSemantics

Workflow Filter concepts with profiles (4)

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Purpose: Filter a list of concept id(s) by returning only those with a concept profile in the database.

Created: 2012-09-14 | Last updated: 2014-07-14

Credits: User Kristina Hettne User Reinout van Schouwen User Martijn Schuemie Network-member BioSemantics

Workflow List Concept Sets (3)

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Pupose: The workflow returns a list of all Concept Set IDs currently available in the database. The Concept Sets have an hierarchical structure that can be inferred by referring to the parent Concept Set ID.

Created: 2012-07-06 | Last updated: 2014-07-14

Credits: User Kristina Hettne User Marco Roos User Reinout van Schouwen User Martijn Schuemie Network-member BioSemantics

Workflow Example of Execute_SQL_Query with parameters (1)

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This workflow connects to a mysql on localhost, queries the "world" database which is one of the test databases on MySQL 5.5, queries it about which countries have Dutch as a language, and emits answers in both Lists and in xml. This workflow is intended as an example to help you see the syntax for the various inputs to this local service beanshell. see: http://www.mygrid.org.uk/dev/wiki/display/taverna/Execute+SQL+Query for instructions on jars, dependencies etc. The jar used he...

Created: 2012-03-16 | Last updated: 2012-03-16

Credits: User Helen Hulme

Workflow Match concept profiles (6)

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Purpose of workflow: The workflow can be used to match a set of concept profiles with another set of concept profiles. Result: A list of concepts ordered by their match to the query concept profiles.

Created: 2011-12-02 | Last updated: 2014-07-14

Credits: User Marco Roos User Kristina Hettne User Martijn Schuemie User Reinout van Schouwen

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