File Entry: Plots an attribute similarity matrix on gene data (R script)

Created: 2011-05-23 13:01:44      Last updated: 2011-05-25 15:46:10
Information Version 1 (of 1)

Version created on: 2011-05-23 13:01:43

Last edited on: 2011-05-25 15:46:10


Information Description

Plots an attribute similarity matrix computed from the provided data frame. The input dataset is prepared in the "prepare-gene-correlation" RM workflow and is assumed to contain genes as rows, and gene functions and locations as columns. In the visualized matrix columns correspond to gene locations and rows correspond to gene functions. The supported types of attribute similarities are: the covariance, the Hamming distance, and a modified Hamming distance that focuses on columns with 1s. It requires "libs.R" to be in the same directory.


Information Download

Information Uploader

Information License

All versions of this File are licensed under:

Information Credits (1)

(People/Groups)

Information Attributions (0)

(Workflows/Files)

None

Information Tags (0)

None

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (1)

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

872 viewings

372 downloads

[ see breakdown ]

 

Version History

In chronological order:



Comments Comments (0)

No comments yet

Log in to make a comment


What is this?

Linked Data

Non-Information Resource URI: http://www.myexperiment.org/files/518


Alternative Formats

HTML
RDF
XML