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InviteGroup: BioRange_NL
Introduction ------------
BioRange[1] is a Dutch nationwide program for bioinformatics research. It is associated with VL-e[2], an e-science research project that investigates and develops technology to enhance science through general grid-based infrastructure and tools for six diverging applications. Bioinformatics is one of them. Another association is with BioAssist[3], a bioinformatics support program. BioRange and BioAssist are organised by NBIC[4], the Dutch Bioinformatics Centre.
The Adaptive Information Disclosure (AID)[5] group is part of the VL-e project and the BioRange program through its bioinformatics applications.
[1]: http://www.nbic.nl/research/biorange [2]: http://www.vl-e.nl [3]: http://www.nbic.nl/support/BioAssist [4]: http://www.nbic.nl [5]: http://adaptivedisclosure.org
Created at: Wednesday 01 August 2007 @ 13:03:24 (GMT)
Unique name: biorange_nl
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Created: 21/03/08 @ 19:00:12 | Last updated: 23/03/08 @ 10:39:27
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
A movie to show the principle of the round trip from a biology question via pieces of code wrapped as web services and combined into a workflow (computational experiment) in Taverna, via uploading to myExperiment and back to the biologist through myExperiment's run facility. NB: at the time of uploading this movie the runner-option was in test-phase.
It is important to note that the workflow combines the work of various scientists with different expertise and some at remote locations around ...
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Created: 15/05/09 @ 15:45:32 | Last updated: 11/08/11 @ 10:01:23
Supporting material for BMC Bioinformatics, supplement for Semantic Web Applications and Tools for Life Science (2009)
Structuring and extracting knowledge for the support of hypothesis generation in molecular biology
Marco Roos, M. Scott Marshall, Andrew P. Gibson, Martijn Schuemie, Edgar Meij, Sophia Katrenko, Willem Robert van Hage, Konstantinos Krommydas, Pieter W. Adriaans
Acknowledgements
We thank the myGrid team and OMII-UK for their support in applying their e-Science tools, and M...
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Created: 16/05/09 @ 01:06:26 | Last updated: 16/05/09 @ 01:13:18
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License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
This workflow is for demonstration purposes only. Please contact the authors if you wish to try it. We will gladly collaborate with you.
Summary
This workflow extracts proteins and protein relations from Medline. Extracted protein names (symbols of at least 3 characters) are validated against mouse, rat, and human UniProt symbols, so the results are limited to these species. This workflow follows the following basic steps:
it retrieves documents relevant for the query string
i...
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Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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