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InviteGroup: BioAssist_NL
NBIC's BioAssist program
BioAssist[1], organised by the Netherlands BioInformatics Centre (NBIC[2]), is a program for support and dissemination of bioinformatics tools and expertise in the Netherlands. It advocates the use of e-science standards such as web services and workflow. It is associated with the projects VL-e[3] and BioRange[4].
Links:
- http://www.nbic.nl/support/BioAssist
- http://www.nbic.nl
- http://www.vl-e.nl
- http://www.nbic.nl/research/BioRange
Created at: Wednesday 01 August 2007 @ 13:05:51 (GMT)
Unique name: bioassist_nl
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Created: 21/03/08 @ 19:00:12 | Last updated: 23/03/08 @ 10:39:27
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
A movie to show the principle of the round trip from a biology question via pieces of code wrapped as web services and combined into a workflow (computational experiment) in Taverna, via uploading to myExperiment and back to the biologist through myExperiment's run facility. NB: at the time of uploading this movie the runner-option was in test-phase.
It is important to note that the workflow combines the work of various scientists with different expertise and some at remote locations around ...
File type: AVI video Rating: 1.0 / 5 (1 rating) | Comments: 1 | Viewed: 261 times | Downloaded: 244 times Tags: |
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Created: 26/10/09 @ 10:15:03
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This document has been accepted at the NBIC management team meeting of 22 October 2009, and will serve as ageneral guideline to run the BioAssist program of NBIC. It might be a good idea to read the short document before you contact BioAssist for support in the scope of your 'code' or 'content' interests.
Barend Mons
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Created: 16/05/09 @ 01:06:26 | Last updated: 16/05/09 @ 01:13:18
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License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
This workflow is for demonstration purposes only. Please contact the authors if you wish to try it. We will gladly collaborate with you.
Summary
This workflow extracts proteins and protein relations from Medline. Extracted protein names (symbols of at least 3 characters) are validated against mouse, rat, and human UniProt symbols, so the results are limited to these species. This workflow follows the following basic steps:
it retrieves documents relevant for the query string
i...
Rating: 0.0 / 5 (0 ratings) | Versions: 7 | Reviews: 0 | Comments: 1 | Citations: 0 Viewed: 149 times | Downloaded: 31 times Tags (10): |
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Created: 20/05/10 @ 18:46:07 | Last updated: 22/11/10 @ 10:32:03
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
2D Time Alignment
We describe a new time alignment method that takes advantage of both dimensions of LC-MS data to resolve ambiguities in peak matching while remaining computationally efficient. This approach, Warp2D, combines peak extraction with a two-dimensional correlation function to provide a reliable alignment scoring function that is insensitive to spurious peaks and background noise. One-dimensional alignment methods are often based on the total-ion-current eluti...
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Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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