Log in
Register
Give us Feedback
InviteGroup: BioSemantics Privileged Users @ Human Genetics LUMC + collaborators
Group of colleagues at the Human Genetics Department of the Leiden University Medical Centre and closely collaborating groups who are interested to be prime users of new developments in BioSemantics and e-Science, and in return are willing to provide feedback and suggestions. See http://biosemantics.org for more information about the BioSemantics collaboration in the Netherlands.
Created at: Wednesday 23 September 2009 @ 01:10:24 (GMT)
Unique name: LeidenBioSemanticsUsers
Members
Owner
No news
Note: some items may not be visible to you, due to viewing permissions.
Workflow
|
Original Uploader |
Created: 16/05/09 @ 01:06:26 | Last updated: 16/05/09 @ 01:13:18
Credits:
License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
This workflow is for demonstration purposes only. Please contact the authors if you wish to try it. We will gladly collaborate with you.
Summary
This workflow extracts proteins and protein relations from Medline. Extracted protein names (symbols of at least 3 characters) are validated against mouse, rat, and human UniProt symbols, so the results are limited to these species. This workflow follows the following basic steps:
it retrieves documents relevant for the query string
i...
Rating: 0.0 / 5 (0 ratings) | Versions: 7 | Reviews: 0 | Comments: 1 | Citations: 0 Viewed: 149 times | Downloaded: 31 times Tags (10): |
 View
 Download (v7)
|
Workflow
|
Original Uploader |
Created: 26/04/11 @ 08:31:51 | Last updated: 26/04/11 @ 08:31:52
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow adds meaning to gene expresion values by performing a standard and a literature weighted Global Test. Gene expression is expected to be from Affymetrix microarrays, for which an RMA normalization and entrez Gene ID mapping/summation is performed.
Original workflow is by Dennis Leenheer, edits by Marco Roos. Scripts by Kristina Hettne, acknowledging Rob Jellier, Jelle Goeman, and Peter-Bram 't Hoen.
The workflow was created for the LUMC BioSemantics group, part of the Human Gen...
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 29 times | Downloaded: 0 times Tags (8): |
View
|
No credits yet
Linked Data
Non-Information Resource URI: http://www.myexperiment.org/groups/211
Alternative Formats
Copyright © 2007 - 2011 The University of Manchester and University of Southampton
No comments yet
Log in to make a comment