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InviteGroup: Steyn Pharmaceuticals Ltd Unplanned Genetic Experiments (SPLUGE)
Newcastle University MSc Bioinformatics team A
Created at: Friday 12 March 2010 @ 11:03:29 (GMT)
Unique name: spluge
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Created: 17/03/10 @ 11:01:09 | Last updated: 17/03/10 @ 11:05:00
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow takes the file path to two genome nucleotide files in fasta format and requests a minimum similarity required from the user. The genomes are aligned according to the M-GCAT algorithm (http://alggen.lsi.upc.es/recerca/align/mgcat/intro-mgcat.html) and the genome similarity parsed out of the resultant log file. Output is either 0 (genome similarity less than required similarity) or 1 (genome similarity equal to or greater than the required similarity).
NB - The file p...
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Created: 16/03/10 @ 17:46:06 License: Creative Commons Attribution 3.0 Unported License
Splits a flat file containing multiple fasta sequences into a list of fasta sequences.
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Created: 17/03/10 @ 17:43:24 | Last updated: 17/03/10 @ 17:44:58
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Convert another database ID to a KEGG ID.
Valid namespaces are NCBI_gi, GebBank, UniProt, UniGene, PMID or OMIM.
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Created: 18/03/10 @ 12:38:50
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
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Created: 18/03/10 @ 12:39:55 | Last updated: 18/03/10 @ 12:40:43
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
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Created: 19/03/10 @ 15:40:02 | Last updated: 19/03/10 @ 15:40:26
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Find pathways in which all the genes in the list are involved. For each pathway draw the pathway diagram. Colour all enzyme boxes with colours specified. This workflow still has one problem. The list of colours have to be specified. I would like ideally to only except one background and one foreground colour and expand that to a list with length equivalent to the number of enzymes found - just duplicating the specified colours. However with almost no Taverna documentation to speak of, none of...
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