Group: Sage Bionetworks

News

1. 

   Peter Li shared Sage bionetwork demo workflow

   

   This workflow performs key driver analysis and displays the results in Cytoscape.

   Wednesday 08 May 2013 14:52:01 (UTC)
2. 

   Peter Li shared Quality control processing of GEO datasets

   

   The workflow performs a quality control process on gene expression data sets stored in the Gene Expression Omnibus database. The QC process is performed using Bioconductor R packages. A variety of statistics are produced by the workflow including a diagnostic plot from snm normalisation and nucleotid …

   Wednesday 06 April 2011 15:00:00 (UTC)
3. 

   Lisejl, Mduke, Max, and Bhmecham joined the Sage Bionetworks group
4. 

   Peter Li shared AlitoraKDAInputModule test workflow

   

    This workflow calls the AlitoraKDAInputModule service from the test GenePattern server.

   Wednesday 07 July 2010 11:14:20 (UTC)
5. 

   Paul Fisher shared Entrez Gene to KEGG Pathway

   

   This workflow takes in Entrez gene ids then adds the string "ncbi-geneid:" to the start of each gene id. These gene ids are then cross-referenced to KEGG gene ids. Each KEGG gene id is then sent to the KEGG pathway database and its relevant pathways returned.

   Wednesday 14 April 2010 12:40:46 (UTC)
6. 

   Carole Goble joined the Sage Bionetworks group

   Sunday 21 March 2010 14:40:54 (UTC)
7. 

   Peter Li shared Invocation of Gene Pattern modules using R

   

    A workflow to invoke a Gene Pattern module using an R script. Note that a FTP URL for the data to be analysed is required, not the data itself!

   Friday 19 March 2010 10:26:35 (UTC)
8. 

   Peter Li shared Visualise KDA output data with Cytoscape

   

   This workflow retrieves a data file on a web server directory and launches Cytoscape to visualise it.

   Wednesday 17 March 2010 20:19:09 (UTC)
9. 

   Katy Wolstencroft, and Paul Fisher joined the Sage Bionetworks group
10. 

    Peter Li shared Test workflow for logging into Alitora and getting information about a specific meme

    

    Wednesday 17 March 2010 12:04:28 (UTC)
11. 

    Peter Li shared Log out from Alitora system

    

    A nested workflow to be used for logging out of Alitora

    Wednesday 17 March 2010 12:00:23 (UTC)
12. 

    Peter Li shared Log into Alitora system

    

    A nested workflow to be used for logging into Alitora

    Wednesday 17 March 2010 11:57:59 (UTC)