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InviteGroup: Sage Bionetworks
A group to share workflows for the Sage Bionetworks demo
Created at: Wednesday 17 March 2010 @ 11:53:59 (GMT)
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Created: 17/03/10 @ 11:57:58
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
A nested workflow to be used for logging into Alitora
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 8 times | Downloaded: 3 times This Workflow has no tags! |
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Workflow
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Created: 17/03/10 @ 12:00:22 | Last updated: 17/03/10 @ 12:09:46
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
A nested workflow to be used for logging out of Alitora
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 3 times | Downloaded: 0 times This Workflow has no tags! |
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Workflow
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Created: 17/03/10 @ 12:04:26
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
No description
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 16 times | Downloaded: 2 times This Workflow has no tags! |
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Workflow
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Created: 18/03/10 @ 09:53:47 | Last updated: 18/03/10 @ 09:53:48
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow retrieves a data file on a web server directory and launches Cytoscape to visualise it.
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 22 times | Downloaded: 1 time This Workflow has no tags! |
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Workflow
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Created: 19/03/10 @ 10:26:34 | Last updated: 19/03/10 @ 10:29:08
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
A workflow to invoke a Gene Pattern module using an R script. Note that a FTP URL for the data to be analysed is required, not the data itself!
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 20 times | Downloaded: 2 times Tags (2): |
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Workflow
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Created: 22/03/10 @ 09:56:03
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow performs key driver analysis and displays the results in Cytoscape.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 51 times | Downloaded: 2 times Tags (2): |
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Workflow
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Created: 15/04/10 @ 12:22:12 | Last updated: 15/04/10 @ 12:22:13
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow takes in Entrez gene ids then adds the string "ncbi-geneid:" to the start of each gene id. These gene ids are then cross-referenced to KEGG gene ids. Each KEGG gene id is then sent to the KEGG pathway database and its relevant pathways returned.
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 64 times | Downloaded: 1 time Tags (7): |
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Workflow
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Created: 07/07/10 @ 11:14:19 | Last updated: 07/07/10 @ 11:16:04
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow calls the AlitoraKDAInputModule service from the test GenePattern server.
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Workflow
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Created: 06/04/11 @ 14:59:59 | Last updated: 11/04/11 @ 15:46:58 License: Creative Commons Attribution-Share Alike 3.0 Unported License
The workflow performs a quality control process on gene expression data sets stored in the Gene
Expression Omnibus database. The QC process is performed using Bioconductor R packages. A variety of statistics are produced by the workflow including a diagnostic plot from snm normalisation and nucleotide composition bias.
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 26 times | Downloaded: 3 times Tags (1): |
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