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InviteGroup: e-science support team for NBIC
This group brings together scientists with expertise in both (medical) bioinformatics and e-science. The members can give advice to bioinformaticians who want to adopt an 'e-science approach'. They want to share their expertise and experience for the application of technologies such as workflow, web/biomoby services, grid, semantic web, etcetera.
The group was founded in particular for the Dutch BioAssist programme lead by NBIC (Netherlands BioInformatics Centre). BioAssist is a bioinformatics support programme that has chosen an e-science approach to implement analysis pipelines for a number of bioinformatics platforms in the Netherlands (see BioAssist_NL).
Created at: Sunday 16 March 2008 @ 22:23:11 (GMT)
Unique name: eScienceSupportTeam4NBIC
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Created: 21/03/08 @ 19:00:12 | Last updated: 23/03/08 @ 10:39:27
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
A movie to show the principle of the round trip from a biology question via pieces of code wrapped as web services and combined into a workflow (computational experiment) in Taverna, via uploading to myExperiment and back to the biologist through myExperiment's run facility. NB: at the time of uploading this movie the runner-option was in test-phase.
It is important to note that the workflow combines the work of various scientists with different expertise and some at remote locations around ...
File type: AVI video Rating: 1.0 / 5 (1 rating) | Comments: 1 | Viewed: 261 times | Downloaded: 244 times Tags: |
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Created: 01/08/08 @ 10:52:42 | Last updated: 01/08/08 @ 12:06:07
Pack of tools and software components that can be used to enhance your research.
'e-science' characteristics:
interoperabie with other tools
free to use by academics
components can be shared and reused, potentially for other means
stimulating sharing and reusing components
1 item in this pack Comments: 0 | Viewed: 81 times | Downloaded: 15 times Tags: |
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Workflow
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Created: 16/05/09 @ 01:06:26 | Last updated: 16/05/09 @ 01:13:18
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License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
This workflow is for demonstration purposes only. Please contact the authors if you wish to try it. We will gladly collaborate with you.
Summary
This workflow extracts proteins and protein relations from Medline. Extracted protein names (symbols of at least 3 characters) are validated against mouse, rat, and human UniProt symbols, so the results are limited to these species. This workflow follows the following basic steps:
it retrieves documents relevant for the query string
i...
Rating: 0.0 / 5 (0 ratings) | Versions: 7 | Reviews: 0 | Comments: 1 | Citations: 0 Viewed: 149 times | Downloaded: 31 times Tags (10): |
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