Group: Bio-Linux

This group is indended for users of the NEBC Bio-Linux system. We hope to write workflows that take advantage of the bioinformatics software we provide on Bio-Linux (http://nebc.nox.ac.uk/biolinux.html).

Created at: Friday 18 April 2008 @ 11:37:26 (GMT)

Unique name: biolinux

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Bela

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Taverna 1

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Bela

fetchEnsemblSeqsAndBlast (v1)

Created: 18/04/08 @ 11:53:19 | Last updated: 18/04/08 @ 11:58:30

Credits: Bela

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow allows you to configure a BioMart query to fetch sequences you want from Ensembl. These sequences are retrieved and a blast database of them is created (by default, in the directory you ran taverna from). Warning: This workflow assumes that you have blastall and formatdb installed on the machine, and that by default, these are both found or linked in /usr/local/bin. It also assumes that you have write permission to the directory you have run taverna from. The beanshells "creat...

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