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Items tagged with "grid service" (8)

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Workflows (8)

Taverna 1 Original Uploader Wei Tan	Using CQL to query protein sequence data (v1) Created: 05/12/08 @ 22:03:03 \| Last updated: 14/07/09 @ 19:32:17 Credits: Wei Tan License: Creative Commons Attribution-Share Alike 3.0 Unported License To query protein sequence infomation out of 3 caGrid data services: caBIO, CPAS and GridPIR. Scientific value To query protein sequence information out of 3 caGrid data services: caBIO, CPAS and GridPIR. To analyze a protein sequence from different data sources. Steps Querying CPAS and get the id, name, value of the sequence. Querying caBIO and GridPIR using the id or name obtained from CPAS. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 179 times \| Downloaded: 54 times Tags (9): cabig \| cabio \| cagrid \| cancer research \| cpas \| globus \| grid service \| gridpir \| protein	View Download (v1)
Taverna 1 Original Uploader Wei Tan	hierarchical microarray clustering (v1) Created: 05/12/08 @ 18:31:53 \| Last updated: 05/12/08 @ 20:33:37 Credits: Wei Tan License: Creative Commons Attribution-Share Alike 3.0 Unported License To illustrate our caGrid plug-in’s application, we tested it with a microarray hierarchical clustering workflow that involves services hosted at multiple institutions. Microarrays are a high-throughput technology used to measure the expression of tens of thousands of genes in different tissues or cells. Scientists represent the data from each microarray via a vector (profile) in which each element represents a gene’s expression level. They use clustering analysis to identify sim... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 177 times \| Downloaded: 72 times Tags (8): cabig \| cagrid \| cancer research \| clustering \| gene expression \| globus \| grid service \| microarray	View Download (v1)
Taverna 1 Original Uploader Wei Tan	caDSR metadata query in caGrid (v1) Created: 05/12/08 @ 17:45:17 \| Last updated: 05/12/08 @ 18:20:25 Credits: Wei Tan License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow shows the coordinated use of two services in CaGrid, i.e., the caDSR (Cancer Data Standards Repository) and EVS (Enterprise Vocabulary Services) services. caDSR is to define a comprehensive set of standardized metadata descriptors for cancer research terminology used in information collection and analysis. EVS provides resources and services to meet NCI needs for controlled terminology, and to facilitate the standardization of terminology and information systems across the Insti... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 92 times \| Downloaded: 34 times Tags (7): cabig \| cadsr \| cagrid \| cancer research \| globus \| grid service \| metadata	View Download (v1)
Taverna 2 Original Uploader Wei Tan	Lymphoma type prediction based on microarray data (v7) Created: 11/05/10 @ 19:04:30 \| Last updated: 11/05/10 @ 19:04:32 Credits: Wei Tan Ravi Stian Soiland-Reyes License: Creative Commons Attribution-Share Alike 3.0 Unported License Scientific value Using gene-expression patterns associated with DLBCL and FL to predict the lymphoma type of an unknown sample. Using SVM (Support Vector Machine) to classify data, and predicting the tumor types of unknown examples. Steps Querying training data from experiments stored in caArray. Preprocessing, or normalize the microarray data. Adding training and testing data into SVM service to get classification result. Rating: 5.0 / 5 (1 rating) \| Versions: 7 \| Reviews: 0 \| Comments: 0 \| Citations: 3 Viewed: 585 times \| Downloaded: 228 times Tags (11): cabig \| cagrid \| cancer research \| classification \| gene expression \| globus \| grid service \| lymphoma \| lymphoma workflow \| microarray \| support vector machine	View Download (v7)
Taverna 2 Original Uploader Stian Soiland-Reyes	Using CQL to query protein sequence data (v1) Created: 07/05/09 @ 14:28:59 Credits: Stian Soiland-Reyes Attributions: Using CQL to query protein sequence data License: Creative Commons Attribution-Share Alike 3.0 Unported License To query protein sequence infomation out of 3 caGrid data services: caBIO, CPAS and GridPIR Adapted from http://www.myexperiment.org/workflows/600 Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 154 times \| Downloaded: 68 times Tags (10): cabig \| cabio \| cagrid \| cancer research \| cpas \| globus \| grid service \| gridpir \| protein \| sequence	View Download (v1)
Taverna 2 Original Uploader Wei Tan	An example workflow with WSRF service (v1) Created: 28/07/09 @ 17:24:05 Credits: Wei Tan Stian Soiland-Reyes License: Creative Commons Attribution-Share Alike 3.0 Unported License An example workflow with WSRF service The service used is http://sidgrid.ci.uchicago.edu:8100/wsrf/services/CounterService The service is included in Globus toolkit installation (ws-core). If the it is down you can host your own and modify the workflow definition file to point to your own. The workflow first creates a counter instance and adds the value 10 for two times to the same counter. Therefore the result should be 20. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 154 times \| Downloaded: 40 times Tags (5): cabig \| example \| globus \| grid service \| wsrf	View Download (v1)
Taverna 2 Original Uploader Wei Tan	caDSR Data service query in caGrid (v3) Created: 25/05/10 @ 19:16:58 \| Last updated: 11/06/10 @ 04:50:15 Credits: Wei Tan License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow is used as an example in this wiki article: https://wiki.cagrid.org/display/knowledgebase/How+to+Create+CaGrid+Workflow+Using+Taverna+2 Tested with Taverna 2.1.2 as of 6/10/2010 Rating: 0.0 / 5 (0 ratings) \| Versions: 3 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 76 times \| Downloaded: 61 times Tags (5): cabig \| cadsr \| cancer research \| example \| grid service	View Download (v3)
Taverna 2 Original Uploader Wei Tan	caArray data retrieving (v1) Created: 23/11/09 @ 18:09:47 Credits: Wei Tan License: Creative Commons Attribution-Share Alike 3.0 Unported License Query all the gene expression data in a caArray experiment. Returns a evenly divided gene expression data set with corresponding class information. They ca be later used as training and test data set in many classification algorithms.Query all the gene expression data in a caArray experiment. Returns a evenly divided gene expression data set with corresponding class information. They can be later used as training and test data set in many classification algorithms. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 3 \| Citations: 0 Viewed: 47 times \| Downloaded: 17 times Tags (8): caarray \| cabig \| cagrid \| functional workflow \| gene \| globus \| grid service \| microarray	View Download (v1)