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Original Uploader

Katy Wolstencroft

Retrieve Protein Sequence and BLAST (v1)

Created: 09/11/07 @ 10:41:12 | Last updated: 05/06/08 @ 15:18:08

Credits: Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 License

Retrieves a protein sequence in Fasta format from Genbank and then performs a BLAST on that sequence

Rating: 4.0 / 5 (2 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 602 times | Downloaded: 13 times

Original Uploader

Paul Fisher

BLASTP with simplified results returned (v2)

Created: 03/10/07 @ 18:36:06 | Last updated: 13/11/07 @ 16:14:48

License: Creative Commons Attribution-NoDerivs 3.0 License

Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.

Rating: 4.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 764 times | Downloaded: 738 times

Original Uploader

Stian Soiland-Reyes

REST access of xml.nig.ac.jp (WABI) (v1)

Created: 14/10/08 @ 16:17:58 | Last updated: 14/10/08 @ 16:39:03

Credits: Stian Soiland-Reyes

License: Creative Commons Attribution 3.0 License

This workflow has a beanshell script for composing the REST URL for the services at xml.nig.ac.jp  (WABI) This URL is passed to the local worker Get_web_page_from_URL that fetches the requested data. Note: This is a proof of concept of accessing REST services through Taverna. All of WABI's services can more easily be browsed and used in Taverna by adding their WSDL, for instance http://xml.nig.ac.jp/wsdl/GetEntry.wsdl The example invokes the getDDBJEntry(accession) method of the getE...

Rating: 4.0 / 5 (1 rating) | Versions: 1 | Reviews: 1 | Comments: 1 | Citations: 0

Viewed: 133 times | Downloaded: 97 times