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Items tagged with "bio2rdf" (45)

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Workflows (41)

Taverna 2 Original Uploader Francois Belleau	Text search within sparql point (v1) Created: 19/01/09 @ 16:37:53 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow make possible full text search within different sparql point made available by the Bio2RDF project. Rating: 1.0 / 5 (1 rating) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 96 times \| Downloaded: 44 times Tags (3): bio2rdf \| sparql \| text_mining	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Author's collaborators according to pubmed (v1) Created: 20/01/09 @ 02:22:32 \| Last updated: 20/01/09 @ 03:41:26 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License SELECT distinct ?s2 FROM <http://atlas.bio2rdf.org/sparql> WHERE { ?s1 ?p1 ?o1 . ?o1 bif:contains "author" . ?s2 ?p2 ?s1 . FILTER( regex(?s1, "pubmed") ) } followed by SELECT ?creator, count() FROM <http://localhost:8890/sparql> WHERE { ?s1 ?p1 . ?s1 ?p2 ?o2 . FILTER( regex(?o2, "author")) ?s1 ?creator . } ORDER BY DESC(count()) Rating: 3.0 / 5 (1 rating) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 154 times \| Downloaded: 67 times Tags (4): bio2rdf \| pubmed \| sparql \| text_mining	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	What is Paget's disease sparql query example (v3) Created: 20/01/09 @ 03:34:08 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License SELECT distinct ?s1 FROM <http://atlas.bio2rdf.org/sparql> WHERE { ?s1 ?p1 ?o1 . ?o1 bif:contains "paget" . FILTER( regex(?s1, "omim") OR regex(?s1, "geneid") OR regex(?s1, "uniprot")) } followed by SELECT ?type1, count() FROM <http://localhost:8890/sparql> WHERE { ?s1 ?p1 ?o1 . ?o1 bif:contains "paget" . ?s1 Rating:* 3.0 / 5 (1 rating) \| Versions: 3 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 280 times \| Downloaded: 68 times Tags (8): bio2rdf \| example \| GO \| OMIM \| pubmed \| sparql \| text_mining \| uniprot	View Download (v3)
Taverna 2 Original Uploader Francois Belleau	What is known about HIV using Bio2RDF's SPARQL endpoints ? (v2) Created: 05/02/09 @ 06:13:53 \| Last updated: 05/02/09 @ 06:15:22 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License To answer this question Bio2RDF Atlas about mouse and human genome sparql endpoint available at http://atlas.bio2rdf.org/sparql is searched. The selected URIs are then loaded into your local Virtuoso triplestore at http://localhost:8890/sparql. You must enable insert mode into the graph. Once the mashup is built, two SPARQL queries analyze the obtained graph. Finally you can submit queries to the RDF mashup about HIV as you like. Enjoy. This is the queries present in t... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 2 \| Citations: 0 Viewed: 207 times \| Downloaded: 64 times Tags (8): bio2rdf \| geneid \| hiv \| OMIM \| pubmed \| sparql \| uniprot \| virtuoso	View Download (v2)
Taverna 2 Original Uploader Francois Belleau	Initialize triplestore with Murin's protocol ontology (v1) Created: 17/02/09 @ 04:40:17 \| Last updated: 17/02/09 @ 04:42:28 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow initialize the Sesame triplestore with initial data. The 5 rdfiser in JSP are needed, they are executed on localhost. Rating: 1.0 / 5 (1 rating) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 40 times \| Downloaded: 23 times Tags (4): affymetrix \| bio2rdf \| murin \| sesame	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Load affymetrix experiments results into Sesame triplestore for a specific tissue (v1) Created: 17/02/09 @ 04:54:30 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License The affymetrix data source is not public. Rating: 1.0 / 5 (1 rating) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 45 times \| Downloaded: 23 times Tags (4): affymetrix \| bio2rdf \| murin \| sesame	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Sesame triplestore loader from a dereferenced URI (v2) Created: 19/02/09 @ 05:02:34 \| Last updated: 19/02/09 @ 05:03:08 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License Load triples obtained from an URL in N3 or XML format and load them into your local Sesame Triplestore locally installed and available at http://localhost/sesame. The http://localhost/sesame/servlets/uploadURL service of Sesame is used in HTTP POST mode. Rating: 1.0 / 5 (1 rating) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 57 times \| Downloaded: 29 times Tags (6): bio2rdf \| http \| sesame \| triples loader \| triplestore \| utility	View Download (v2)
Taverna 2 Original Uploader Francois Belleau	Bio2RDF: Sesame triplestore loader from triples (v2) Created: 19/02/09 @ 07:00:03 \| Last updated: 19/02/09 @ 07:25:39 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License INSERT IN GRAPH Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 43 times \| Downloaded: 23 times Tags (4): bio2rdf \| sesame \| triples loader \| triplestore	View Download (v2)
Taverna 2 Original Uploader Francois Belleau	Bio2rdf: Bind search, rdfise and load demo (v1) Created: 19/02/09 @ 05:07:30 \| Last updated: 19/02/09 @ 05:39:51 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License INSERT IN GRAPH <http://localhost/sesame/mem_rdf_db> { CONSTRUCT { ?s, ?p, ?o . } FROM <http://soap.bind.ca/wsdl/bind.wsdl> WHERE { SELECT ?s FROM <http://soap.bind.ca/wsdl/bind.wsdl> WHERE { ?s, ?p, ?o . ... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 53 times \| Downloaded: 28 times Tags (4): bind \| bio2rdf \| demo \| search	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Bio2RDF: Rdfiser for Bind protein interaction. (v1) Created: 19/02/09 @ 05:10:23 \| Last updated: 19/02/09 @ 05:24:29 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License CONSTRUCT{ <bmuri>, ?p, ?o . } FROM <http://soap.bind.ca/wsdl/bind.wsdl> WHERE { <bmuri>, ?p, ?o . } Rating: 5.0 / 5 (1 rating) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 54 times \| Downloaded: 25 times Tags (6): bind \| bio2rdf \| database \| protein \| rdf \| rdfiser	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Bio2RDF: Bind fulltext search service returning bmuris. (v1) Created: 19/02/09 @ 05:18:44 \| Last updated: 19/02/09 @ 05:26:17 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License SELECT ?s FROM <http://soap.bind.ca/wsdl/bind.wsdl> WHERE { ?s, ?p, ?o . FILTER ( regex(?o, "query")) . } Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 33 times \| Downloaded: 19 times Tags (3): bind \| bio2rdf \| search	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Bio2RDF: CPath search, rdfise and load demo (step 1) (v1) Created: 19/02/09 @ 07:06:58 \| Last updated: 19/02/09 @ 07:08:28 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License Search for a list of genes into the Pathway Commons interaction database and load the fetched triples into a triplestore. INSERT IN GRAPH < http://localhost/sesame/mem_rdf_db> { CONSTRUCT{ ?s, ?p, ?o . } FROM < http://www.pathwaycommons.org/pc/webservice.do> WHERE { SELECT ?s FROM <http://www.pathwaycommons.org/pc/webservice.do> ... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 49 times \| Downloaded: 27 times Tags (5): bio2rdf \| cpath \| demo \| pathway commons \| protein interaction	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Bio2RDF: CPath search, rdfise and load demo (step 2) (v1) Created: 19/02/09 @ 07:14:23 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License No description Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 35 times \| Downloaded: 23 times Tags (4): bio2rdf \| cpath \| demo \| pathway commons	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Bio2RDF: CPath describe interaction (v1) Created: 19/02/09 @ 07:16:24 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License No description Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 36 times \| Downloaded: 24 times Tags (3): bio2rdf \| cpath \| rdfiser	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Bio2RDF: CPath reverse links (v1) Created: 19/02/09 @ 07:18:17 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License No description Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 36 times \| Downloaded: 25 times Tags (3): bio2rdf \| cpath \| reverse links	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Bio2RDF: CPath search in taxon (v1) Created: 19/02/09 @ 07:20:36 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License No description Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 2 \| Citations: 0 Viewed: 60 times \| Downloaded: 31 times Tags (4): bio2rdf \| cpath \| search \| taxonomy	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Get the list of GeneID for all pathways of a specified taxon (v1) Created: 28/04/09 @ 07:48:40 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License No description Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 54 times \| Downloaded: 31 times Tags (6): bio2rdf \| broken \| demo \| hcls2009 \| kegg \| pathways	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Insert in local triplestore GeneID and KEGG pathway (v1) Created: 28/04/09 @ 07:55:10 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License No description Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 54 times \| Downloaded: 29 times Tags (7): bio2rdf \| demo \| hcls2009 \| kegg \| pathway \| pathways \| triplestore	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Load GO terms in the triplestore (v1) Created: 01/05/09 @ 14:36:50 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License No description Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 88 times \| Downloaded: 35 times Tags (4): bio2rdf \| GO \| hcls2009 \| virtuoso	View Download (v1)
Bioclipse Scripting Language Original Uploader Egon Willighagen	Open PDB entries in Jmol for hits found for HIV in Bio2RDF (v3) Created: 14/03/10 @ 21:26:05 \| Last updated: 23/06/10 @ 20:20:41 Credits: Egon Willighagen License: Creative Commons Attribution-Share Alike 3.0 Unported License Queries Bio2RDF for proteins of which the title contains 'HIV', downloads them using the EMBL webservices and opens them in Bioclipse for visualization with Jmol. Rating: 1.0 / 5 (2 ratings) \| Versions: 3 \| Reviews: 1 \| Comments: 0 \| Citations: 0 Viewed: 110 times \| Downloaded: 25 times Tags (10): bio2rdf \| bioclipse \| cheminformatics \| drug development \| hiv \| jmol \| pdb \| proteins \| rdf \| sparql	View Download (v3)
Taverna 2 Original Uploader Francois Belleau	What is [query] from NCBI, EBI, UniProt and KEGG ? (v2) Created: 03/11/09 @ 04:29:15 \| Last updated: 03/11/09 @ 04:29:19 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License test values: query = paget disease query = pdb4 query = hk1 query = h1n1 This rdfiser query those four federated search services EB-Eye, KEGG LinkDB, NCBI Entrez and UniProt knowledgebase. RDF triples are returned for search statistics with Bio2RDF normalised URIs. This workflow should be used responsibly because it can generate high load at the provider resources. test values: query = paget disease query = pdb4 query = hk1 query = h1n1 query = paget disease query = pdb4 query = hk1 que... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 120 times \| Downloaded: 25 times Tags (8): bio2rdf \| cognoscope \| eb-eye \| kegg \| ncbi \| rdfiser \| search \| uniprot	View Download (v2)
Taverna 2 Original Uploader Francois Belleau	Search for BMURI in PubMed [myexperiment:pubmed_step1_search] (v1) Created: 17/11/09 @ 06:59:06 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License test values: subkecttest values: query = bio2rdf graph = http://bio2rdf query = nur77 AND Rouillard,C graph = http://nur77 test values: query = bio2rdf graph = http://bio2rdf query = nur77 AND Rouillard,C graph = http://nur77 query = labrie graph = http://labrie Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 36 times \| Downloaded: 18 times Tags (5): bio2rdf \| cognoscope \| pubmed \| search \| sparql	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Search for citations and related article in PubMed [myexperiment:pubmed_step2_link] (v1) Created: 17/11/09 @ 07:02:11 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License graph = http://nur77 bmuri = http://bio2rdf.org/pubmed:18843482 http://bio2rdf.org/pubmed:18466322 http://bio2rdf.org/pubmed:17201484 http://bio2rdf.org/pubmed:14603264 http://bio2rdf.org/pubmed:12629527 Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 61 times \| Downloaded: 11 times Tags (6): bio2rdf \| citation \| cognoscope \| pubmed \| search \| sparql	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Sponge into Virtuoso triplestore the needed ressource from PubMed [myexperiment:pubmed_step3_describe] (v2) Created: 17/11/09 @ 07:09:01 \| Last updated: 27/11/09 @ 03:32:15 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License query = labrie,f query = labrie query = labrie,f query = labrie query = h1n1 query = morissette,j query = labrie,f query = labrie query = h1n1 Get a list of paper from pubmed. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 59 times \| Downloaded: 20 times Tags (6): bio2rdf \| cognoscope \| describe \| pubmed \| rdfiser \| sparql	View Download (v2)
Taverna 2 Original Uploader Francois Belleau	Triplify KEGG database list [myexperiments:kegg_namespace2rdf] (v2) Created: 28/11/09 @ 18:06:16 \| Last updated: 30/11/09 @ 20:17:03 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License TAG: knowledgescope, kegg, bio2rdf, banff_manifesto, rdf Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 19 times \| Downloaded: 13 times Tags (5): banff_manifesto \| bio2rdf \| cognoscope \| kegg \| rdf	View Download (v2)
Taverna 2 Original Uploader Francois Belleau	Triplify search results from all KEGG databases [myexperiments:kegg_search_all2rdf] (v3) Created: 30/11/09 @ 20:44:13 \| Last updated: 30/11/09 @ 20:44:55 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License Search all KEGG databases using bfind SOAP service and merge results into a bmuri list and a ntriples string. Rating: 0.0 / 5 (0 ratings) \| Versions: 3 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 32 times \| Downloaded: 19 times Tags (6): bfind \| bio2rdf \| cognoscope \| kegg \| rdf \| search_all	View Download (v3)
Taverna 2 Original Uploader Francois Belleau	Triplify UniProt database list [myexperiments:uniprotkb_namespace2rdf] (v1) Created: 30/11/09 @ 19:35:17 \| Last updated: 30/11/09 @ 19:43:03 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License TAG: knowledgescope, uniprotkb, bio2rdf, banff_manifesto Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 13 times \| Downloaded: 8 times Tags (5): banff_manifesto \| bio2rdf \| cognoscope \| rdf \| uniprotkb	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Triplify UniProt text search results [myexperiments:uniprotkb_search2rdf] (v1) Created: 30/11/09 @ 19:55:35 \| Last updated: 30/11/09 @ 19:56:33 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License TAG: knowledgescope, uniprotkb, bio2rdf, search, rdf Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 19 times \| Downloaded: 12 times Tags (5): bio2rdf \| cognoscope \| rdf \| search \| uniprotkb	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Triplify UniProt text search results from all databases [myexperiments:uniprotkb_search_all2rdf] (v2) Created: 30/11/09 @ 20:44:32 \| Last updated: 30/11/09 @ 20:45:08 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License Search all UniProt databases using search URL service and merge results into a bmuri list and a ntriples string. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 31 times \| Downloaded: 13 times Tags (5): bio2rdf \| cognoscope \| rdf \| search_all \| uniprotkb	View Download (v2)
Taverna 2 Original Uploader Francois Belleau	Triplify EB-Eye databases list from EBI [myexperiments:eb-eye_namespace2rdf2rdf] (v1) Created: 30/11/09 @ 20:58:14 \| Last updated: 30/11/09 @ 20:59:49 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License TAG: knowledgescope, eb-eye, bio2rdf, banff_manifesto, rdf, ebi, soap Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 24 times \| Downloaded: 13 times Tags (7): banff_manifesto \| bio2rdf \| cognoscope \| eb-eye \| ebi \| rdf \| soap	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Triplify namespace list from global search services from EBI, KEGG, NCBI and UniProt [myexperiment:search_services_namespace2rdf] (v1) Created: 30/11/09 @ 21:38:23 \| Last updated: 30/11/09 @ 21:44:57 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License No description Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 19 times \| Downloaded: 11 times Tags (7): banff_manifesto \| bio2rdf \| cognoscope \| ebi \| kegg \| ncbi \| uniprot	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Triplify NCBI databases list [myexperiment:ncbi_namespace2rdf] (v1) Created: 30/11/09 @ 21:47:05 \| Last updated: 01/12/09 @ 02:49:34 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License List NCBI's database name. Using this URL service: http://www.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi? This is NCBI's namespace list supported by Bio2RDF : pubmed protein nucleotide gene=geneid homologene mesh omim pccompound=cid pcsubstance=sid taxonomy unigene unists Rating: 1.0 / 5 (1 rating) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 24 times \| Downloaded: 10 times Tags (4): banff_manifesto \| bio2rdf \| cognoscope \| ncbi	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Triplify NCBI databases external reference list [myexperiment:ncbi_xref_namespace2rdf] (v1) Created: 01/12/09 @ 03:01:28 \| Last updated: 01/12/09 @ 03:03:24 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License Get NCBI external database list from http://www.ncbi.nlm.nih.gov/projects/collab/db_xref.html Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 27 times \| Downloaded: 13 times Tags (5): banff_manifesto \| bio2rdf \| ncbi \| rdf \| xref	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Triplify UniProt database external reference [myexperiment:uniprot_xref_namespace2rdf] (v2) Created: 01/12/09 @ 04:08:08 \| Last updated: 01/12/09 @ 04:09:39 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License Get UniProt external database list from http://www.ncbi.nlm.nih.gov/projects/collab/db_xref.html Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 23 times \| Downloaded: 10 times Tags (4): banff_manifesto \| bio2rdf \| uniprot \| xref	View Download (v2)
Taverna 2 Original Uploader Francois Belleau	Triplify search results from KEGG bfind SOAP service [myexperiments:kegg_search2rdf] (v3) Created: 30/11/09 @ 16:21:05 \| Last updated: 30/11/09 @ 20:48:50 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow use KEGG's SOAP service provided to do a BFIND serch within one of the KEGG's official database. The results are returned in RDF ntriples format. Rating: 0.0 / 5 (0 ratings) \| Versions: 3 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 20 times Tags (6): bfind \| bio2rdf \| cognoscope \| kegg \| search \| soap	View Download (v3)
Taverna 2 Original Uploader Francois Belleau	Triplify LSRN record name list [myexperiment:lsrn_xref_namespace2rdf] (v1) Created: 01/12/09 @ 06:24:54 \| Last updated: 01/12/09 @ 06:27:20 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License Get LSRN list from http://www.lsrn.org/lsrn/registry-2009-04-26-32404.rdf Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 10 times \| Downloaded: 8 times Tags (5): banff_manifesto \| bio2rdf \| lsrn \| rdf \| xref	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Triplify GO database external reference [myexperiment:go_xref_namespace2rdf] (v1) Created: 01/12/09 @ 06:28:26 \| Last updated: 01/12/09 @ 06:29:35 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License Get GO external database list from http://www.geneontology.org/doc/GO.xrf_abbs Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 34 times \| Downloaded: 13 times Tags (5): banff_manifesto \| bio2rdf \| GO \| rdf \| xref	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Triplify namespace XREF list from GO, LSRN, NCBI and UniProt [myexperiment:xref_namespace2rdf] (v1) Created: 01/12/09 @ 06:56:54 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License TAG: banff_manifesto, xref, bio2rdf, rdfTAG: banff_manifesto, xref, bio2rdf, rdf, mashup Triplify namespace XREF list from GO, LSRN, NCBI and UniProt [myexperiment:xref_namespace2rdf] TAG: banff_manifesto, xref, bio2rdf, rdf TAG: banff_manifesto, xref, bio2rdf, rdf Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 45 times \| Downloaded: 14 times Tags (5): banff_manifesto \| bio2rdf \| mashup \| rdf \| xref	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Rdfise Riken SciNes Database Repository [myexperiment:scines2rdf] (v1) Created: 01/02/10 @ 20:10:43 \| Last updated: 01/02/10 @ 20:13:51 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow rdfise Riken SciNes Database Repository available at https://database.riken.jp/sw/links/en/crib151s2i/. There is a bug with main page listing databases: version 2p and 3p are similar to 1p. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 24 times \| Downloaded: 9 times Tags (6): bio2rdf \| biohackathon_2010 \| cognoscope \| riken \| scires \| sesame	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	ChEBI mashup from searched string (v1) Created: 29/04/10 @ 14:09:37 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License A demo showing hoe to use SOAP services from Bio2RDF ChEBI SPARQL endpoint.A demo showing hoe to use SOAP services from Bio2RDF ChEBI SPARQL endpoint. First a full text search query is done, then we do a reverse link query to get all the related topic. Finally with a describe queries we obtain the complete graph of each topic. The ntriples result is a mashup of what is known about this searched topic form ChEBI. This graph can then be loaded in a triplestore for further exploration. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 9 times Tags (5): bio2rdf \| chebi \| demo \| mashup \| soap	View Download (v1)
Taverna 2 Original Uploader Francois Belleau	Who is Dr Labrie according to Pubmed publication queried with a cognoscope ? (v2) Created: 08/07/10 @ 07:18:09 \| Last updated: 08/07/10 @ 07:32:26 Credits: Francois Belleau License: Creative Commons Attribution-Share Alike 3.0 Unported License To use this wokflow you need to import services from To use this wokflow you need to import services from http://proxy.bio2rdf.org/bio2rdf/services.txt you can explore the loaded data at http://proxy.bio2rdf.org/fct Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 8 times Tags (4): bio2rdf \| cognoscope \| pubmed \| virtuoso	View Download (v2)

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Francois Belleau

Bio2RDF

Unique name: bio2rdf Created: Saturday 24 January 2009 @ 17:20:54 (GMT)

The goal of this community is to explore the possibilities of using Taverna platform with Virtuoso SPARQL engine to build useful workflow capable of answering complex question by using the distributed network of RDF data available over the web.

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