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Items tagged with "pug" (2)

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Workflows (2)

Taverna 1

Original Uploader

Michael Gerlich

Download Entries from PubChem (v1)

Created: 30/03/09 @ 09:20:42 | Last updated: 30/03/09 @ 09:34:37

Credits: Michael Gerlich

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Given a list of identifiers (e.g. CID) and their appropriate type (eID_CID - note that these differ slightly from the original identifier name -> CID <-> eID_CID), this workflow queries PubChem via PUG to retrieve a download URL for the resulting XML file containing the results. Adding support for downloading this XML file and writing it to filesystem is planned.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 73 times | Downloaded: 51 times

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Download (v1)

Taverna 1

Original Uploader

Michael Gerlich

MassBank to KEGG (v1)

Created: 30/03/09 @ 09:30:32 | Last updated: 30/03/09 @ 09:49:13

Credits: Michael Gerlich

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Workflow that queries MassBank DB to retrieve database identifiers (KEGG, PubChem, InChI) and continue search with them to retrieve pathways from KEGG for given compound identifier,searches PubChem via eutils and PUG, queries ChemSpider for compound information and image. Note: Usage of ChemSpider web services requires a valid security token - receive one by registering at ChemSpider (look at your profile to see your token)

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 194 times | Downloaded: 0 times

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