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Items tagged with "image processing" (11)

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Workflows (9)

Taverna 2 Original Uploader Roman	Extract histogram features from image file (v1) Created: 16/06/11 @ 17:09:20 \| Last updated: 16/06/11 @ 17:18:46 Credits: Roman License: Creative Commons Attribution-Share Alike 3.0 Unported License As a template for creation of image workflows was used xa-toolwrapper project from Sven Schlarb (https://github.com/openplanets/scape/tree/master/xa-toolwrapper). This project enables creation of WSDL web service that wraps command line tool like ‘extractFeatures’ or ‘create’. The workflow for ‘extractFeatures’ tool has two input parameters. The URL to the input image file and the number of histogram bins as integer. This workflow extracts histogram feature... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 2 times Tags (5): characterisation \| command line tool \| image \| image processing \| quality assurance	View Download (v1)
Taverna 2 Original Uploader Roman	Compare histogram features of image files (v1) Created: 16/06/11 @ 17:22:04 \| Last updated: 16/06/11 @ 17:26:12 Credits: Roman License: Creative Commons Attribution-Share Alike 3.0 Unported License As a template for creation of image workflows was used xa-toolwrapper project from Sven Schlarb (https://github.com/openplanets/scape/tree/master/xa-toolwrapper). This project enables creation of WSDL web service that wraps command line tool like ‘extractFeatures’ or ‘create’. The workflow for ‘compare’ tool has three input parameters. These are two URLs to the XML histogram files that comprise information about image features. These files are acquired us... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 21 times \| Downloaded: 4 times Tags (5): command line tool \| comparison \| image \| image processing \| quality assurance	View Download (v1)
Taverna 2 Original Uploader Roman	Extract histogram features from image file using RESTful interface (v1) Created: 01/07/11 @ 13:15:37 \| Last updated: 01/07/11 @ 13:40:50 Credits: Roman License: Creative Commons Attribution-Share Alike 3.0 Unported License The main element of this workflow is a RESTful service designed in the SCAPE QA command line tools RESTful package https://github.com/openplanets/scape/tree/master/pc-qa-toolwrapper-rest. The Github project https://github.com/openplanets/scape/tree/master/xa-rester from Andy Jackson is a basis implementation for pc-qa-toolwrapper-rest package. The QA REST package enables creation of RESTful web service that wraps QA command line tool like ‘extractfeatures’ or ‘create’... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 13 times \| Downloaded: 2 times Tags (5): command line tool \| image \| image processing \| quality assurance \| restful service	View Download (v1)
Taverna 2 Original Uploader Roman	Common SCAPE QA command line tool RESTful service (v1) Created: 01/07/11 @ 13:48:30 \| Last updated: 01/07/11 @ 13:59:03 Credits: Roman License: Creative Commons Attribution-Share Alike 3.0 Unported License The QA REST package enables creation of RESTful web service that wraps any QA command line tools. The main element of this workflow is a RESTful service designed in the SCAPE QA command line tools RESTful package https://github.com/openplanets/scape/tree/master/pc-qa-toolwrapper-rest. The Github project https://github.com/openplanets/scape/tree/master/xa-rester from Andy Jackson is a basis implementation for pc-qa-toolwrapper-rest package. The workflow comprises path to the RESTful servi... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 12 times \| Downloaded: 4 times Tags (5): command line tool \| image \| image processing \| quality assurance \| restful service	View Download (v1)
RapidMiner Original Uploader Staryvena	Basic local features extraction with learner (v1) Created: 08/09/11 @ 22:04:03 \| Last updated: 09/09/11 @ 09:00:18 Credits: Staryvena License: Creative Commons Attribution-No Derivative Works 3.0 Unported License This process is simple example of local feature extraction with model traininig (using SVM and X-validation). Input is grayscale source image and image mask. White places are true and black false. This workflow needs IMMI - Rapidminer 5 Image Processing Extension. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 32 times \| Downloaded: 24 times Tags (4): image feature extraction \| image mining \| image processing \| rapidminer	View Download (v1)
RapidMiner Original Uploader Staryvena	Basic local features extraction (v1) Created: 08/09/11 @ 21:54:51 \| Last updated: 09/09/11 @ 09:00:58 Credits: Staryvena License: Creative Commons Attribution-No Derivative Works 3.0 Unported License This process is simple example of local feature extraction with no model training. Input is grayscale source image and image mask. White places are true and black false. This workflow needs IMMI - Rapidminer 5 Image Processing Extension. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 26 times \| Downloaded: 16 times Tags (4): image feature extraction \| image mining \| image processing \| rapidminer	View Download (v1)
RapidMiner Original Uploader Staryvena	Basic local features extraction with process area (v1) Created: 08/09/11 @ 22:02:19 \| Last updated: 09/09/11 @ 08:59:20 Credits: Staryvena License: Creative Commons Attribution-No Derivative Works 3.0 Unported License This process is simple example of local feature extraction with no model training. Input is grayscale source image and image mask. White places are true and black false. Thresholdig operator is used to limit processed pixels only to non black (values greater than 0). This workflow needs IMMI - Rapidminer 5 Image Processing Extension. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 46 times \| Downloaded: 16 times Tags (4): image feature extraction \| image mining \| image processing \| rapidminer	View Download (v1)
RapidMiner Original Uploader Staryvena	Image mining performace visualize (v1) Created: 09/09/11 @ 10:28:01 \| Last updated: 09/09/11 @ 10:29:20 Credits: Staryvena License: Creative Commons Attribution-No Derivative Works 3.0 Unported License This process is simple example of apply trained model to mined data from image. Results are performance and probability visualization. This workflow needs IMMI - Rapidminer 5 Image Processing Extension. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 43 times \| Downloaded: 20 times Tags (4): image feature extraction \| image mining \| image processing \| rapidminer	View Download (v1)
Taverna 2 Original Uploader Roman	Image files comparison using histograms and profiles V1.0 (v2) Created: 22/11/11 @ 12:29:08 \| Last updated: 23/11/11 @ 13:47:20 Credits: Roman License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow extracts histogram and profile features from image file applying image processing command line tool. Necessary configuration files are stored on Github (https://github.com/openplanets/scape/tree/master/pc-qa-toolwrapper). As a template for creation of image workflows was used xa-toolwrapper project from Sven Schlarb (https://github.com/openplanets/scape/tree/master/xa-toolwrapper). This workflow provides WSDL web service that wraps command line tool with tho options ‘extra... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 13 times \| Downloaded: 1 time Tags (7): command line tool \| features \| file comparison \| image \| image processing \| quality assurance \| tools	View Download (v2)

Files (2)

Uploader:

Konstantin Kozlov

ProStack Screencast: Segmentation of Images of Gene Expression Patterns

Created: 20/05/10 @ 19:48:40

Credits: Konstantin Kozlov

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

ProStack (Processing of Stacks) is a platform for image processing and analysis. It implements various image processing methods as separate modules, that can be joined in a complex image processing scenario by use of a graphical user interface. This video demonstrates the workflow for extraction of quantitative information on gene expression from confocal images. ProStack home page: urchin.spbcas.ru/downloads/ProStack/ProStack.htm Download:sourceforge.net/projects/prostack/

File type: AVI video

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Uploader:

Konstantin Kozlov

Interaction with OMERO server from ProStack - screencast

Created: 03/08/10 @ 07:25:46 | Last updated: 03/08/10 @ 07:25:49

Credits: Konstantin Kozlov

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The modules of ProStack image processing platform are described that allow to: browse OMERO datasets, fetch an image for processing in ProStack, insert a resulting image into the dataset.

File type: video/mp4

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