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Items tagged with "segmentation" (3)

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Workflows (2)

Taverna 2

Original Uploader

Xplanes

Segmentation (v2)

Created: 12/01/11 @ 16:03:28 | Last updated: 25/01/11 @ 16:41:27

Credits: Xplanes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Threshold input VTK image, apply gaussian blur and marching cubes. Taverna Plugin version: 0.2.2 GIMIAS Version: 1.3.0-win32 Temporary folder: C:\Data (you need to create it manually)

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

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LONI Pipeline

Original Uploader

Pipeline

Sub-Volume Probabilistic Atlas Segmentaiton (SVPA-SEG) (v1)

Created: 06/04/11 @ 00:24:00 | Last updated: 06/04/11 @ 00:24:06

Credits: Pipeline

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow takes a raw unskull-stripped volume and a brain mask of the volume to create a tissue segmented image.This workflow is based on a novel genetic algorithm based finite mixture model and a local 3D Markov random field segmentation algorithm based on iterative conditional modes algorithm. Problem addressed by this workflow This workflow performs tissue segmentation on the brain volumes using genetic algorithm based finite mixture model (GAMIXTURE), local 3D Markov ...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

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Files (1)

Uploader:

Konstantin Kozlov

ProStack Screencast: Segmentation of Images of Gene Expression Patterns

Created: 20/05/10 @ 19:48:40

Credits: Konstantin Kozlov

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

ProStack (Processing of Stacks) is a platform for image processing and analysis. It implements various image processing methods as separate modules, that can be joined in a complex image processing scenario by use of a graphical user interface. This video demonstrates the workflow for extraction of quantitative information on gene expression from confocal images. ProStack home page: urchin.spbcas.ru/downloads/ProStack/ProStack.htm Download:sourceforge.net/projects/prostack/

File type: AVI video

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