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Items tagged with "simplifier" (2)

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Taverna 1

Original Uploader

Paul Fisher

BLASTP with simplified results returned (v2)

Created: 03/10/07 @ 18:36:06 | Last updated: 13/11/07 @ 16:14:48

License: Creative Commons Attribution-NoDerivs 3.0 License

Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.

Rating: 4.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 764 times | Downloaded: 738 times

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Taverna 1

Original Uploader

Paul Fisher

Simpliy a BLAST text file (v2)

Created: 03/10/07 @ 18:36:06 | Last updated: 13/11/07 @ 16:28:08

License: Creative Commons Attribution-NoDerivs 3.0 License

This workflow simplifies a BLAST text file into identifiers, descriptions and values (P, E-values). In order to extract the relevant ids etc. you need to pass the relevant string into the corresponding port, e.g. the default port being used is gi. This has been passed "gi". For any other ports simply pass in the string the SAME as the port name, e.g. seq_id, p, per etc.

Rating: 4.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 935 times | Downloaded: 711 times

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