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Items tagged with "metabolic engineering" (5)

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Blob Pathway example for Selenzyme

Created: 2017-08-18 08:35:57 | Last updated: 2017-08-23 11:13:20

Credits: User Pablo Carbonell

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Example of an input file containing information about a metabolic pathway to query the KNIME workflow for Selenzyme, an enzyme selection tool for pathway design.The file contains a list of reactions or generic reactions expressed in SMILES or SMARTS (SMIRKS) format. In the example, the list of reactions correspond to the different steps of a biosynthetic pathway.

File type: text/csv

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Network-member BioRetroSynth

Unique name: BioRetroSynth
Created: Wednesday 24 May 2017 12:13:13 (UTC)

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Pack Selenzyme


Created: 2017-08-18 08:23:47 | Last updated: 2017-08-23 11:12:00

Enzyme selection workflow for pathway design

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Workflows (2)

Workflow RetroPath2.0 - a retrosynthesis workflow w... (1)

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The RetroPath2.0 KNIME workflow build a reaction network from a set of source compounds to a set of sink compounds.When applied in a retrosynthetic fashion, the source is composed of the target compounds and the sink is composed of the available reactants (for instance in the context of metabolic engineering the sink is the set of native metabolites of a chassis strain). From amongst all the chemical reactions generated using RetroPath2.0 (in the retrosynthetic way), only a subset may effecti...

Created: 2017-05-24

Credits: User Baudoin Delépine Network-member BioRetroSynth

Workflow Workflow for Selenzyme v 1.0 (2)

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Created: 2017-08-18 | Last updated: 2017-09-08

Credits: User Pablo Carbonell

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Non-Information Resource URI: http://www.myexperiment.org/tags/5885


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