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Items tagged with "xpath" (13)

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Workflows (10)

Taverna 1 Original Uploader Stuart Owen	Extract_GetCompoundDetails_with_xpath (v1) Created: 28/11/07 @ 15:46:02 \| Last updated: 19/02/08 @ 15:35:47 Credits: Stuart Owen Egon Willighagen License: Creative Commons Attribution-Share Alike 3.0 Unported License No description Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 1 \| Citations: 0 Viewed: 70 times \| Downloaded: 48 times Tags (3): broken \| example \| xpath	View Download (v1)
Taverna 2 Original Uploader James Eales	Termine with c-value threshold (v1) Created: 19/02/10 @ 09:57:15 \| Last updated: 13/12/11 @ 15:52:56 Credits: James Eales License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow accepts a list of sentences from a single document and returns the terms found by the TerMine web service. It also allows you to set a threshold c-value score so that only terms with a user-controlled probability (of being a real term) are returned as an output. To get sentences to supply to this workflow you can use the sentence splitting workflow. The TerMine service (used in this workflow) only accepts text in ASCII encoding, so you should also use the Clean p... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 92 times \| Downloaded: 20 times Tags (7): e-lico \| term \| term extraction \| termine \| text mining \| workflow component \| xpath	View Download (v1)
Taverna 2 Original Uploader Peter Li	Calculating frequencies of gene expression levels using microarray data in MaxD (v1) Created: 15/03/10 @ 08:43:31 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow retrieves data from the MaxD microarray database and calculates the frequencies of gene expression levels using an R script Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 52 times \| Downloaded: 0 times Tags (9): beanshell \| database \| expression \| gene \| image \| maxd \| microarray \| r \| xpath	View
Taverna 2 Original Uploader Anja Le Blanc	Extracting data from VOTable format by using XPath query (v1) Created: 01/07/10 @ 14:01:03 \| Last updated: 01/07/10 @ 14:01:04 Credits: Anja Le Blanc Donal Fellows License: Creative Commons Attribution-Share Alike 3.0 Unported License Input VOTable and 'name' of a Output corrosponding data of that field in an arrayInput VOTable and 'name' of a Field Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 31 times \| Downloaded: 16 times Tags (4): filter \| heliophysics \| votable \| xpath	View Download (v1)
Taverna 2 Original Uploader Alan Williams	Example workflow for REST and XPath activities (v1) Created: 13/09/10 @ 14:27:25 \| Last updated: 13/09/10 @ 14:31:33 Credits: Sergejs Aleksejevs License: Creative Commons Attribution 3.0 Unported License Note that this workflow depends upon the REST and XPath plugins. This workflow fetches weather forecast for the user-specified location. First of all it uses the provided location name to obtain a WOEID ("Where On Earth ID") of that location, then uses that unique identifier to fetch the weather forecast from Yahoo server. Multiple results may be obtained in case there is no unique translation of the location to a WOEID. REST activity is used to perform HTTP requests and fetch d... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 83 times \| Downloaded: 47 times Tags (4): example \| rest \| weather \| xpath	View Download (v1)
Taverna 2 Original Uploader Anja Le Blanc	retrive dpas data for all ics instruments for HEC event data (v1) Created: 14/09/10 @ 13:55:06 \| Last updated: 14/09/10 @ 13:59:12 Credits: Anja Le Blanc Attributions: Extracting data from VOTable format by using XPath query Retrieve all data for all instruments for a given periode of time License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow demonstrates the standard query there events for a period of time are requested from the HEC service, available instruments for this time come from the ICS and data only for the times of the events are requested from the DPAS. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 14 times \| Downloaded: 9 times Tags (6): astrophysics \| heliophysics \| solar \| votable \| xml \| xpath	View Download (v1)
Taverna 2 Original Uploader Anja Le Blanc	retrive dpas data for all ics instruments for only a limited number (3 random) HEC event data (v1) Created: 14/09/10 @ 14:24:20 \| Last updated: 14/09/10 @ 14:24:24 Credits: Anja Le Blanc Attributions: retrive dpas data for all ics instruments for HEC event data License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow demonstrates the standard query where events for a period of time are requested from the HEC service, available instruments for this time come from the ICS and data only for the times of the events are requested from the DPAS. In this version data from only 3 random events (out of the HEC list) will be requested from the DPAS. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 22 times \| Downloaded: 11 times Tags (6): astrophysics \| heliophysics \| solar \| votable \| xml \| xpath	View Download (v1)
Taverna 2 Original Uploader Paul Fisher	XPath Pubmed Ids (v1) Created: 23/03/11 @ 11:24:23 \| Last updated: 23/03/11 @ 11:24:58 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow takes in a search term (as used in the normal PubMed interface) and retrieves a list of PubMed ids in xml Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 13 times \| Downloaded: 16 times Tags (3): bonn \| pubmed \| xpath	View Download (v1)
Taverna 2 Original Uploader Paul Fisher	XPath Pubmed Ids (v2) Created: 23/03/11 @ 16:19:10 \| Last updated: 30/03/11 @ 09:28:13 Credits: Paul Fisher Attributions: XPath Pubmed Ids License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow takes in a search term (as used in the normal PubMed interface) and retrieves a list of PubMed ids in xml. The xml is then parsed to retrieve a list of PubMed ids Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 25 times \| Downloaded: 21 times Tags (3): pubmed \| xml \| xpath	View Download (v2)
Taverna 2 Original Uploader Kalai	Download Structures from PubChem given chemical names (v1) Created: 24/05/11 @ 13:13:52 \| Last updated: 24/05/11 @ 14:19:24 Credits: Kalai Michael Gerlich Attributions: Download Entries from PubChem License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow takes the input file containing chemical names and returns a single SDF file of structures. The names are searched against pubchem compounds via e-search. If the compound name is found an XML file containing PubChem ID is returned.The max return compound_ID is set to 1 which could be increased. If the compound name is not found then no ID is returned. The pubchem compound_ID is then used to download structures from PubChem. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 30 times \| Downloaded: 12 times Tags (26): bioinformatics \| cheminformatics \| compound \| data \| download file \| esearch \| eutils \| file \| list \| ncbi \| open science \| open source \| pccompound \| split \| string \| structure \| structure retrieval \| synthetic \| taverna 2 \| taverna2 \| url2list \| workflow \| workflows \| wsdl \| xml \| xpath	View Download (v1)