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Items tagged with "phobius" (2)

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Workflows (2)

Original Uploader

Workflow EBI_Phobius (v2)

Created: 01/06/08 @ 11:08:45 | Last updated: 02/06/08 @ 21:39:06

Credits: User Hamish McWilliam

License: Creative Commons Attribution 3.0 Unported License

Ebi_phobius_21230_2
The Phobius tool predicts transmembrane domains and signal peptide region from a protein sequence. This workflow uses the EBI's WSPhobius web service (see http://www.ebi.ac.uk/Tools/webservices/services/phobius) to access the tool. The predicted features are returned in a UniProtKB style feature listing.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 88 times | Downloaded: 41 times

Tags (8):

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Original Uploader

Workflow Protein_transmembrane_prediction (v2)

Created: 26/10/08 @ 21:16:10

Credits: User Hamish McWilliam

Attributions: Workflow EBI_InterProScan_tmhmm_signalp Workflow EBI_Phobius Workflow tmap_single_sequence

License: Creative Commons Attribution 3.0 Unported License

Protein_transmembrane_prediction
Transmembrane and signal peptide prediction using three methods: EMBOSS tmap with a single sequence. Uses Soaplab tmap. Phobius. Uses EBI's WSPhobius web service. TMHMM and SignalP. Uses the TMHMM and SignalP methods of InterProScan via the EBI's WSInterProScan service. The results of the three methods are converted into GFF format and collated.

Rating: 4.5 / 5 (2 ratings) | Versions: 2 | Reviews: 0 | Comments: 3 | Citations: 0

Viewed: 200 times | Downloaded: 54 times

Tags (11):

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