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Items tagged with "upi" (5)

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Taverna 1 Original Uploader Franck Tanoh	getUPIForSequence workflow (v2) Created: 06/06/08 @ 09:59:59 \| Last updated: 06/06/08 @ 10:07:06 Credits: Franck Tanoh License: Creative Commons Attribution-Share Alike 3.0 Unported License Given a sequence retrieve the UPI (UniProt Archive (UniParc)) identifier. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 30 times \| Downloaded: 0 times Tags (1): upi	View
Taverna 1 Original Uploader Hamish McWilliam	EBI_PICR_Sequence_to_UniParc_and_InterPro (v2) Created: 08/06/08 @ 13:53:39 \| Last updated: 08/06/08 @ 14:10:02 Credits: Hamish McWilliam Attributions: EBI_dbfetch_UniParc EBI_Fetch_InterPro_Matches_UniParc EBI_PICR_Sequence_to_ID License: Creative Commons Attribution 3.0 Unported License Given a protein sequence get some information about it: Does this protein sequence occur in any of the protein databases (e.g. UniProtKB, PDB, etc.). Using the PICR web service (see http://www.ebi.ac.uk/Tools/picr/) map the sequence to a UniParc identifer. Which entries in the protein databases have this sequence. Using the UniParc database (see http://www.ebi.ac.uk/uniprot/database/DBDescription.html#uniparc) a summary of the databases and the entries in those databases which have this s... Rating: 4.0 / 5 (1 rating) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 158 times \| Downloaded: 57 times Tags (13): bioinformatics \| dbfetch \| ebi \| fasta format \| gi \| interpro \| picr \| protein \| sequence identifier \| sequence retrieval \| uniparc \| uniprot archive \| upi	View Download (v2)
Taverna 1 Original Uploader Hamish McWilliam	EBI_PICR_Sequence_to_ID (v1) Created: 08/06/08 @ 14:03:07 Credits: Hamish McWilliam License: Creative Commons Attribution 3.0 Unported License Map a protein sequence to the known identifiers of identical sequences. Uses the EBI's PICR web service (see http://www.ebi.ac.uk/Tools/picr/) to perform the mapping. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 72 times \| Downloaded: 39 times Tags (9): bioinformatics \| ebi \| gi \| picr \| protein \| sequence identifier \| uniparc \| uniprot archive \| upi	View Download (v1)
Taverna 1 Original Uploader Hamish McWilliam	EBI_dbfetch_UniParc (v1) Created: 08/06/08 @ 14:05:40 Credits: Hamish McWilliam License: Creative Commons Attribution 3.0 Unported License From a list of UniParc entry identifers get the complete entries using the EBI's WSDbfetch service (see http://www.ebi.ac.uk/Tools/webservices/services/dbfetch). Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 53 times \| Downloaded: 33 times Tags (9): bioinformatics \| dbfetch \| ebi \| protein \| sequence identifier \| sequence retrieval \| uniparc \| uniprot archive \| upi	View Download (v1)
Taverna 1 Original Uploader Hamish McWilliam	EBI_Fetch_InterPro_Matches_UniParc (v1) Created: 08/06/08 @ 14:08:47 Credits: Hamish McWilliam License: Creative Commons Attribution 3.0 Unported License For a UniParc (see http://www.ebi.ac.uk/uniprot/database/DBDescription.html#uniparc) identifier/accession fetch the assocated InterPro Matches from SRS@EBI (see http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-page+LibInfo+-lib+IPRMC_UNIPARC). Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 65 times \| Downloaded: 34 times Tags (9): bioinformatics \| ebi \| interpro \| protein \| protein annotation \| srs \| uniparc \| uniprot archive \| upi	View Download (v1)