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Items tagged with "bget" (3)

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Workflows (3)

Taverna 1

Original Uploader

Franck Tanoh

bget (v1)

Created: 29/09/08 @ 13:58:00

Credits: Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Retrieve database entries specified by a list of entry_id. Number of entry_id retrieves at a time is restricted up to 100 Example of input: eco:b0002 hin:tRNA-Cys-1

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 35 times | Downloaded: 14 times

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bget

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Taverna 1

Original Uploader

Michael Gerlich

Retrieve Pathways and Compound information from KEGG (v1)

Created: 30/03/09 @ 09:22:36 | Last updated: 30/03/09 @ 09:39:23

Credits: Michael Gerlich

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Given a KEGG compound identifier (e.g. cpd:C00905), this workflow queries KEGG DB for pathways and compound information for each of these compounds. As the KEGG pathway service tries to find pathways which contain all input compounds, the input list is split up to circumvent this behaviour and to search for only one compound in a pathway at a time. Compounds identified in pathways are marked as red in the resulting pathway image.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 73 times | Downloaded: 38 times

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Taverna 1

Original Uploader

Michael Gerlich

MassBank to KEGG (v1)

Created: 30/03/09 @ 09:30:32 | Last updated: 30/03/09 @ 09:49:13

Credits: Michael Gerlich

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Workflow that queries MassBank DB to retrieve database identifiers (KEGG, PubChem, InChI) and continue search with them to retrieve pathways from KEGG for given compound identifier,searches PubChem via eutils and PUG, queries ChemSpider for compound information and image. Note: Usage of ChemSpider web services requires a valid security token - receive one by registering at ChemSpider (look at your profile to see your token)

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 193 times | Downloaded: 0 times

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