User: Peter Li

Name: Peter Li

Joined: Tuesday 13 November 2007 @ 17:42:19 (GMT)

Last seen: Friday 02 March 2012 @ 15:42:24 (GMT)

Email (public): Not specified

Website: http://dbkgroup.org/peter/

Location: Birmingham, United Kingdom

27 Friends

2 Groups (admin)

5 Groups (member)

66 Workflows

3 Packs

1 Files

0 Favourites

Peter Li has been credited 137 times

Peter Li has an average rating of:

4.5 / 5

(2 ratings in total)

for their items

Enjoys dining at buffet restaurants. Counts Tai Wu and Efes as two favourites.

Other contact details:

Not specified

Interests:

Systems biology, cheminformatics.

Field/Industry: Academia

Occupation/Role(s): Experimental Officer

Organisation(s):

University of Birmingham

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Contents (click to expand/contract)

Taverna 2 Original Uploader Peter Li	Quality control processing of GEO datasets (v2) Created: 06/04/11 @ 14:59:59 \| Last updated: 11/04/11 @ 15:46:58 Credits: Peter Li Bhmecham License: Creative Commons Attribution-Share Alike 3.0 Unported License The workflow performs a quality control process on gene expression data sets stored in the Gene Expression Omnibus database. The QC process is performed using Bioconductor R packages. A variety of statistics are produced by the workflow including a diagnostic plot from snm normalisation and nucleotide composition bias. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 30 times \| Downloaded: 3 times Tags (1): sage_bionetworks	View
Taverna 2 Original Uploader Peter Li	BioXSD example workflow (v1) Created: 12/10/10 @ 09:19:17 \| Last updated: 12/10/10 @ 09:21:55 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License An attempt to implement in the BioXSD workflow described by Kalas et al., (2010) Bioinformatics 26:i540-6. The workflow only calls one BioXSD web service (BLAST) since the second service (ClustalW) in the example workflow is currently down :( Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 20 times \| Downloaded: 8 times This Workflow has no tags!	View Download (v1)
Taverna 2 Original Uploader Peter Li	Generate CombiUgi library (v1) Created: 10/08/10 @ 12:15:37 \| Last updated: 10/08/10 @ 12:16:00 Credits: Peter Li Romney License: Creative Commons Attribution-Share Alike 3.0 Unported License Generates a CombiUgi library using data from a Goolgle spreadsheet containing smiles strings of compounds to undergo virtual Ugi reactions Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 14 times Tags (3): cheminformatics \| smiles \| usefulchem	View Download (v1)
Taverna 2 Original Uploader Peter Li	Predict Abraham descriptors (v1) Created: 05/08/10 @ 16:26:19 \| Last updated: 05/08/10 @ 16:26:20 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Predicts descriptor values using a model derived from a linear regression analysis of the Open Notebook Science solubility data and literature values. The workflow returns all the Abraham descriptors E, S, A, B and V in a HTML file.Predicts descriptor values using a model derived from a linear regression analysis of the Open Notebook Science solubility data and literature values Rating: 4.0 / 5 (1 rating) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 16 times \| Downloaded: 29 times Tags (3): cheminformatics \| onssolubility \| usefulchem	View Download (v1)
Taverna 2 Original Uploader Peter Li	Predict chemical solubility in solvents (v2) Created: 04/08/10 @ 11:42:55 \| Last updated: 04/08/10 @ 11:43:30 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Predicts solubility in molar units for a given chemical compound represented as a SMILES string in a given solvent. Uses a beanshell script to enable the user to select the solvent from a list. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 42 times \| Downloaded: 31 times Tags (4): cheminformatics \| onssolubility \| smiles \| usefulchem	View Download (v2)
Taverna 2 Original Uploader Peter Li	download (v2) Created: 16/07/10 @ 10:41:38 \| Last updated: 16/07/10 @ 10:53:32 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Given a list key, prepare for download a file containing those records in the selected format. The original workflow was written by the PubChem team @ NCBI (http://pubchem.ncbi.nlm.nih.gov/). Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 29 times \| Downloaded: 24 times Tags (2): cheminformatics \| pubchem	View Download (v2)
Taverna 2 Original Uploader Peter Li	PubChem substructure search (v2) Created: 16/07/10 @ 10:31:51 \| Last updated: 16/07/10 @ 10:52:28 License: Creative Commons Attribution-Share Alike 3.0 Unported License Search PubChem Compound for structures containing the one given by the structure key input, based on a user-selected level of chemical identity: connectivity only, match isotopes and/or stereo, etc. The original workflow was written by the PubChem team @ NCBI (http://pubchem.ncbi.nlm.nih.gov/). Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 32 times \| Downloaded: 25 times Tags (3): cheminformatics \| pubchem \| smiles	View Download (v2)
Taverna 2 Original Uploader Peter Li	smiles-identity-idlist (v2) Created: 16/07/10 @ 10:20:48 \| Last updated: 16/07/10 @ 10:25:06 License: Creative Commons Attribution-Share Alike 3.0 Unported License Performs a search in Pubchem for compounds similar to an input compound represented in SMILES notation. This workflow is based on the original smiles-identity-idlist workflow written by the PubChem team @ NCBI (http://pubchem.ncbi.nlm.nih.gov/). Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 14 times Tags (3): cheminformatics \| pubchem \| smiles	View Download (v2)
Taverna 2 Original Uploader Peter Li	smiles-identity-idlist (v1) Created: 16/07/10 @ 09:50:50 \| Last updated: 16/07/10 @ 09:53:16 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Searches for similar structures in PubChem to an input SMILES string. This workflow was written by the PubChem team @ NCBI (http://pubchem.ncbi.nlm.nih.gov/). Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 11 times \| Downloaded: 14 times Tags (3): cheminformatics \| pubchem \| smiles	View Download (v1)
Taverna 2 Original Uploader Peter Li	file-similarity-entrez-url (v2) Created: 16/07/10 @ 09:34:45 \| Last updated: 16/07/10 @ 09:43:39 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Performs a 2D structure similarity search on PubChem. The input structure has to be in the form of a SDF file. The original SDF-based similarity search workflow was written by the PubChem team @ NCBI (http://pubchem.ncbi.nlm.nih.gov/). Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 16 times Tags (2): cheminformatics \| pubchem	View Download (v2)
Taverna 2 Original Uploader Peter Li	Simple search (v1) Created: 13/07/10 @ 15:18:44 \| Last updated: 13/07/10 @ 15:18:45 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Performs a lite search on ChemSpider Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 96 times \| Downloaded: 11 times Tags (2): cheminformatics \| chemspider	View Download (v1)
Taverna 2 Original Uploader Peter Li	Search structures in ChEBI database (v1) Created: 13/07/10 @ 15:08:20 \| Last updated: 13/07/10 @ 15:10:10 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Does a substructure, similarity or identity search using a structure in the Chebi database Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 14 times Tags (3): chebi \| cheminformatics \| similarity_search	View Download (v1)
Taverna 2 Original Uploader Peter Li	Get ontology children (v1) Created: 13/07/10 @ 14:51:32 \| Last updated: 13/07/10 @ 14:51:33 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Retrieves the ontology children of an entity including the relationship type, using the ChEBI identifier. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 7 times \| Downloaded: 11 times Tags (3): chebi \| cheminformatics \| ontology	View Download (v1)
Taverna 2 Original Uploader Peter Li	Get ontology parents (v1) Created: 13/07/10 @ 14:48:37 \| Last updated: 13/07/10 @ 14:48:38 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Retrieves the ontology parents of an entity including the relationship type, using the ChEBI identifier. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 7 times \| Downloaded: 10 times Tags (3): chebi \| cheminformatics \| ontology	View Download (v1)
Taverna 2 Original Uploader Peter Li	Get complete entity by list (v1) Created: 13/07/10 @ 14:44:02 \| Last updated: 13/07/10 @ 14:47:57 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Returns information from the chebi database for a list of chebi identifiers Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 16 times \| Downloaded: 11 times Tags (2): chebi \| cheminformatics	View Download (v1)
Taverna 2 Original Uploader Peter Li	Get complete chebi entity (v1) Created: 13/07/10 @ 14:38:12 \| Last updated: 13/07/10 @ 14:38:13 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Returns informations for a given compound represented by its chebi identifier Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 6 times \| Downloaded: 10 times Tags (4): chebi \| cheminformatics \| inchi \| smiles	View Download (v1)
Taverna 2 Original Uploader Peter Li	Asynchronous chemspider search by formula (v1) Created: 13/07/10 @ 14:15:41 \| Last updated: 13/07/10 @ 14:16:17 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Performs an asynchronous search on ChemSpider by molecular formula Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 8 times Tags (3): cheminformatics \| chemspider \| mass_spectrometry	View Download (v1)
Taverna 2 Original Uploader Peter Li	getLiteEntity (v1) Created: 13/07/10 @ 14:14:52 \| Last updated: 13/07/10 @ 14:14:53 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Retrieves a list of "lite" entities containing only the ChEBI ASCII name and ChEBI identifier. The input parameters are a search string and a search category. If the search category is null then it will search under all fields. The search string accepts the wildcard character "" and also unicode characters. You can get maximum results upto 5000 entries at a time. Rating:* 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 9 times \| Downloaded: 9 times Tags (2): chebi \| cheminformatics	View Download (v1)
Taverna 2 Original Uploader Peter Li	chemspider identifier to MOL format (v1) Created: 13/07/10 @ 13:52:02 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Returns the MOL file for a given compound represented by its chemspider identifier Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 11 times \| Downloaded: 18 times Tags (2): cheminformatics \| chemspider	View Download (v1)
Taverna 2 Original Uploader Peter Li	Get structure synonyms (v1) Created: 13/07/10 @ 11:38:56 \| Last updated: 13/07/10 @ 11:38:57 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Returns synonyms for a given compound represented by a MOL fileReturns synonyms for a given compound Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 14 times \| Downloaded: 11 times Tags (2): cheminformatics \| chemspider	View Download (v1)
Taverna 2 Original Uploader Peter Li	Get compound thumbnail (v1) Created: 13/07/10 @ 11:29:03 \| Last updated: 13/07/10 @ 11:29:04 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Returns a small image of the 2D structure of given chemical compound represented by its chemspider identifier Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 9 times Tags (3): cheminformatics \| chemspider \| image	View Download (v1)
Taverna 2 Original Uploader Peter Li	Get compound information (v1) Created: 13/07/10 @ 11:17:08 \| Last updated: 13/07/10 @ 11:17:09 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Returns information about a given compound represented by its chemspider id Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 7 times \| Downloaded: 11 times Tags (4): cheminformatics \| chemspider \| inchi \| smiles	View Download (v1)
Taverna 2 Original Uploader Peter Li	Asynchronous chemspider simple search (v1) Created: 13/07/10 @ 11:08:34 \| Last updated: 13/07/10 @ 11:08:35 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Performs an asynchronous simple search on ChemSpider Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 11 times Tags (2): cheminformatics \| chemspider	View Download (v1)
Taverna 2 Original Uploader Peter Li	Get spectrum information (v1) Created: 13/07/10 @ 09:48:50 \| Last updated: 13/07/10 @ 09:48:51 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Returns information about a spectrum identified by its chemspider spectrum identifier Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 7 times \| Downloaded: 7 times Tags (3): cheminformatics \| chemspider \| mass_spectrometry	View Download (v1)
Taverna 2 Original Uploader Peter Li	Get compound spectra information (v1) Created: 13/07/10 @ 09:42:03 \| Last updated: 13/07/10 @ 09:42:04 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Returns information about spectra stored in ChemSpider for a given compound represented by its chemspider identifier Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 7 times \| Downloaded: 11 times Tags (3): cheminformatics \| chemspider \| mass_spectrometry	View Download (v1)
Taverna 2 Original Uploader Peter Li	Get spectra information (v1) Created: 13/07/10 @ 09:32:27 \| Last updated: 13/07/10 @ 09:32:28 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Returns information about the spectra stored in ChemSpider Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 10 times \| Downloaded: 9 times Tags (3): cheminformatics \| chemspider \| mass_spectrometry	View Download (v1)
Taverna 2 Original Uploader Peter Li	Get ChemSpider record in MOL format (v1) Created: 12/07/10 @ 10:47:44 \| Last updated: 12/07/10 @ 10:47:46 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Returns ChemSpider record in MOL format or empty string in case of failure. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 12 times \| Downloaded: 12 times Tags (2): cheminformatics \| chemspider	View Download (v1)
Taverna 2 Original Uploader Peter Li	Get extended compound information for a list of chemspider identifiers (v1) Created: 12/07/10 @ 10:33:31 \| Last updated: 12/07/10 @ 10:34:11 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Returns information for a given list of chemspider compound identifiers. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 9 times \| Downloaded: 12 times Tags (4): cheminformatics \| chemspider \| inchi \| smiles	View Download (v1)
Taverna 2 Original Uploader Peter Li	Get extended compound information (v1) Created: 12/07/10 @ 10:06:37 \| Last updated: 12/07/10 @ 10:06:39 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Returns information from chemspider for a given chemical represented by its chemspider identifier Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 11 times \| Downloaded: 13 times Tags (3): cheminformatics \| chemspider \| smiles	View Download (v1)
Taverna 2 Original Uploader Peter Li	Get list of chemspider databases (v1) Created: 12/07/10 @ 09:53:38 \| Last updated: 12/07/10 @ 09:53:40 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Returns a list of databases catalogedReturns a list of databases cataloged by ChemSpider Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 9 times \| Downloaded: 13 times Tags (3): cheminformatics \| chemspider \| database	View Download (v1)
Taverna 2 Original Uploader Peter Li	Convert chemical identifier (v1) Created: 09/07/10 @ 15:45:53 \| Last updated: 09/07/10 @ 15:46:31 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Converts a chemical compound identifier from one format to another using the open babel web service provided by ChemSpider Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 12 times Tags (6): cheminformatics \| chemspider \| format_conversion \| inchi \| openbabel \| smiles	View Download (v1)
Taverna 2 Original Uploader Peter Li	SmilesToInchi (v1) Created: 09/07/10 @ 15:37:08 \| Last updated: 09/07/10 @ 15:37:10 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Convert SMILES to InChI. Result is v1.02s InChI. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 7 times \| Downloaded: 6 times Tags (4): cheminformatics \| chemspider \| inchi \| smiles	View Download (v1)
Taverna 2 Original Uploader Peter Li	MolToInchiKey (v1) Created: 09/07/10 @ 12:10:00 \| Last updated: 09/07/10 @ 12:10:02 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Converts a MOL file to an InChIKey. Result is v1.02s InChIKey. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 8 times \| Downloaded: 13 times Tags (3): cheminformatics \| chemspider \| inchi	View Download (v1)
Taverna 2 Original Uploader Peter Li	MolToInchiString (v1) Created: 09/07/10 @ 12:01:45 \| Last updated: 09/07/10 @ 12:01:47 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Converts a MOL file to InChI. Result is v1.02s InChI. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 5 times \| Downloaded: 7 times Tags (3): cheminformatics \| chemspider \| inchi	View Download (v1)
Taverna 2 Original Uploader Peter Li	isValidInChiKey (v1) Created: 09/07/10 @ 11:55:56 \| Last updated: 09/07/10 @ 11:55:58 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Checks that specified argument is valid InChIKey. Works for v1.02b InChIKey only. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 5 times \| Downloaded: 13 times Tags (3): cheminformatics \| chemspider \| inchi	View Download (v1)
Taverna 2 Original Uploader Peter Li	InchiStringToSmiles (v1) Created: 09/07/10 @ 11:38:59 \| Last updated: 09/07/10 @ 11:39:01 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Converts an inchi string into SMILES format Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 10 times \| Downloaded: 11 times Tags (4): cheminformatics \| chemspider \| inchi \| smiles	View Download (v1)
Taverna 2 Original Uploader Peter Li	InChIStringToMolFile (v1) Created: 09/07/10 @ 11:21:23 \| Last updated: 09/07/10 @ 11:23:05 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Converts an InChI string into a MOL file using the Inchi ChemSpider web service Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 7 times \| Downloaded: 10 times Tags (3): cheminformatics \| chemspider \| inchi	View Download (v1)
Taverna 2 Original Uploader Peter Li	InChIStringToInChiKey (v1) Created: 09/07/10 @ 11:12:58 \| Last updated: 09/07/10 @ 11:23:55 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Converts an InChI string to an InChi key Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 6 times \| Downloaded: 11 times Tags (3): cheminformatics \| chemspider \| inchi	View Download (v1)
Taverna 2 Original Uploader Peter Li	InChIToCSID (v1) Created: 09/07/10 @ 11:09:29 \| Last updated: 09/07/10 @ 11:09:31 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Convert InChI to ChemSpider ID Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 8 times \| Downloaded: 12 times Tags (3): cheminformatics \| chemspider \| inchi	View Download (v1)
Taverna 2 Original Uploader Peter Li	InChi key to MOL file (v1) Created: 09/07/10 @ 11:05:11 \| Last updated: 09/07/10 @ 11:05:13 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Returns a MOL file for a given InChi key Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 22 times Tags (4): cheminformatics \| chemspider \| inchi \| smiles	View Download (v1)
Taverna 2 Original Uploader Peter Li	InChi key to Inchi string (v1) Created: 09/07/10 @ 10:58:54 \| Last updated: 09/07/10 @ 11:00:16 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Converts an InChI key to an InChI string using the ChemSpider Inchi web service. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 7 times \| Downloaded: 10 times Tags (4): cheminformatics \| chemspider \| inchi \| smiles	View Download (v1)
Taverna 2 Original Uploader Peter Li	InChi key to ChemSpider identifier (v1) Created: 09/07/10 @ 10:54:07 \| Last updated: 09/07/10 @ 10:54:08 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Returns Converts an InChIKey to a ChemSpider ID Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 12 times \| Downloaded: 11 times Tags (4): cheminformatics \| chemspider \| inchi \| smiles	View Download (v1)
Taverna 2 Original Uploader Peter Li	Generate InChi key (v1) Created: 09/07/10 @ 10:45:09 \| Last updated: 09/07/10 @ 10:45:11 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Generates an inchi key for a given compound using the inchi web service provided by ChemSpider Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 15 times Tags (4): cheminformatics \| chemspider \| inchi \| smiles	View Download (v1)
Taverna 2 Original Uploader Peter Li	Generate inChi information (v1) Created: 09/07/10 @ 10:22:29 \| Last updated: 09/07/10 @ 10:23:47 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Uses the GenerateInchiInfo web service operation from ChemSpider to generate information relating to the InChi string for a given chemical compound Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 13 times \| Downloaded: 22 times Tags (3): cheminformatics \| chemspider \| smiles	View Download (v1)
Taverna 2 Original Uploader Peter Li	Generate inChi (v1) Created: 09/07/10 @ 10:06:35 \| Last updated: 09/07/10 @ 10:08:37 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Generates an inChi string for a given chemical represented by its SMILES string, SDF or MOL file using the inchi web service provided by ChemSpider Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 15 times Tags (4): cheminformatics \| chemspider \| inchi \| smiles	View Download (v1)
Taverna 2 Original Uploader Peter Li	AlitoraKDAInputModule test workflow (v1) Created: 07/07/10 @ 11:14:19 \| Last updated: 07/07/10 @ 11:16:04 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow calls the AlitoraKDAInputModule service from the test GenePattern server. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 6 times \| Downloaded: 0 times Tags (1): sage	View
Taverna 2 Original Uploader Peter Li	Select items from list (v1) Created: 30/03/10 @ 14:04:45 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow pops up a window containing an input list of strings. The user is invited to select one or more strings for downstream processing. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 52 times \| Downloaded: 35 times Tags (3): beanshell \| list \| user_interaction	View Download (v1)
Taverna 2 Original Uploader Peter Li	Copasi time simulation of SBML model (v1) Created: 26/03/10 @ 17:23:25 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Uses the synchronous Copasi time simulation web service to predict the concentrations of species over a time period. The results from Copasi are provided in SBRML format which is visualised as a graph using an R script. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 79 times \| Downloaded: 37 times Tags (6): image \| model \| model_simulation \| sbml \| systems_biology \| user_interaction	View Download (v1)
Taverna 2 Original Uploader Peter Li	SBML model optimisation (v1) Created: 26/03/10 @ 17:21:53 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow modifies reaction kinetic parameters against experimental data stored in the MCISB key results database Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 56 times \| Downloaded: 20 times Tags (4): model \| model_optimisation \| sbml \| systems_biology	View Download (v1)
Taverna 2 Original Uploader Peter Li	SBML model parameterisation (v1) Created: 26/03/10 @ 17:20:14 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow parameterises an SBML model generated by the qualitative SBML model construction workflow Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 60 times \| Downloaded: 24 times Tags (4): model \| r \| sbml \| systems_biology	View Download (v1)
Taverna 2 Original Uploader Peter Li	Construction of skeleton SBML model using subsystem term (v1) Created: 26/03/10 @ 17:11:26 \| Last updated: 26/03/10 @ 17:12:06 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow generates a skeleton SBML model consisting of the metabolic reactions for a given subsystem term. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 49 times \| Downloaded: 24 times Tags (6): graph \| image \| model \| sbml \| systems_biology \| yeast	View Download (v1)
Taverna 2 Original Uploader Peter Li	Construction of skeleton SBML model using a list of yeast ORF numbers (v1) Created: 26/03/10 @ 17:08:13 \| Last updated: 26/03/10 @ 17:13:15 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow generates a skeleton SBML model consisting of the metabolic reactions for a given list of yeast enzymes ORF numbers Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 33 times \| Downloaded: 20 times Tags (7): graph \| image \| model \| ORF \| pathways \| sbml \| yeast	View Download (v1)
Taverna 2 Original Uploader Peter Li	Sage bionetwork demo workflow (v1) Created: 22/03/10 @ 09:56:03 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow performs key driver analysis and displays the results in Cytoscape. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 57 times \| Downloaded: 2 times Tags (2): r \| sage	View
Taverna 2 Original Uploader Peter Li	Invocation of Gene Pattern modules using R (v1) Created: 19/03/10 @ 10:26:34 \| Last updated: 19/03/10 @ 10:29:08 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License A workflow to invoke a Gene Pattern module using an R script. Note that a FTP URL for the data to be analysed is required, not the data itself! Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 20 times \| Downloaded: 2 times Tags (2): r \| sage	View
Taverna 2 Original Uploader Peter Li	Visualise KDA output data with Cytoscape (v2) Created: 18/03/10 @ 09:53:47 \| Last updated: 18/03/10 @ 09:53:48 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow retrieves a data file on a web server directory and launches Cytoscape to visualise it. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 27 times \| Downloaded: 1 time This Workflow has no tags!	View
Taverna 2 Original Uploader Peter Li	Test workflow for logging into Alitora and getting information about a specific meme (v1) Created: 17/03/10 @ 12:04:26 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License No description Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 2 times This Workflow has no tags!	View
Taverna 2 Original Uploader Peter Li	Log out from Alitora system (v1) Created: 17/03/10 @ 12:00:22 \| Last updated: 17/03/10 @ 12:09:46 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License A nested workflow to be used for logging out of Alitora Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 3 times \| Downloaded: 0 times This Workflow has no tags!	View
Taverna 2 Original Uploader Peter Li	Log into Alitora system (v1) Created: 17/03/10 @ 11:57:58 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License A nested workflow to be used for logging into Alitora Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 8 times \| Downloaded: 3 times This Workflow has no tags!	View
Taverna 2 Original Uploader Peter Li	Calculating frequencies of gene expression levels using microarray data in MaxD (v1) Created: 15/03/10 @ 08:43:31 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow retrieves data from the MaxD microarray database and calculates the frequencies of gene expression levels using an R script Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 55 times \| Downloaded: 0 times Tags (9): beanshell \| database \| expression \| gene \| image \| maxd \| microarray \| r \| xpath	View
Taverna 1 Original Uploader Peter Li	Identification of differential genes using the LIMMA Bioconductor package within R (v1) Created: 02/07/08 @ 11:24:12 \| Last updated: 02/07/08 @ 11:28:21 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow starts by retrieving the names of microarray datasets from the Maxd database. The user has to select sets of control and test data which are then analysed by the LIMMA Bioconductor package in an R script. This produces a list of significant differentially expressed genes which is then analysed using the Go Term Finder tool to generate a PDF report of the common GO terms associated with the genes. A CSV file containing the list of sign... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 584 times \| Downloaded: 224 times Tags (6): bioconductor \| limma \| maxd \| microarray \| r \| user_interaction	View Download (v1)
Taverna 1 Original Uploader Peter Li	Identification of differential genes using t-tests by R (v2) Created: 15/04/08 @ 15:37:42 \| Last updated: 01/07/08 @ 17:21:18 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow starts by retrieving the names of microarray datasets from the Maxd database. The user has to select sets of control and test data for analysis using t-tests by R. A list of significant differentially expressed genes is then analysed using the Go Term Finder tool which generates a list of GO terms associated with the genes. A CSV file containing the list of significant genes is also generated. Rating: 5.0 / 5 (1 rating) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 1 Viewed: 463 times \| Downloaded: 156 times Tags (6): beanshell \| maxd \| microarray \| r \| systems biology \| user_interaction	View Download (v2)
Taverna 1 Original Uploader Peter Li	selectworker (v1) Created: 25/03/08 @ 10:01:38 \| Last updated: 25/03/08 @ 10:23:34 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow shows how the selectData beanshell script can be used to select items from a given list for analysis by downstream processors. Use Control and left mouse click to select multiple items. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 2 \| Citations: 0 Viewed: 162 times \| Downloaded: 65 times Tags (2): beanshell \| user_interaction	View Download (v1)
Taverna 1 Original Uploader Peter Li	Mapping microarray data onto metabolic pathways (v1) Created: 14/11/07 @ 16:51:26 \| Last updated: 22/11/07 @ 10:39:32 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow maps microarray data onto metabolic pathway diagrams represented as SBML models drawn using Cell Designer. To run this workflow requires libsbml to be installed into taverna - see http://www.mcisb.org/software/taverna/libsbml/index.html Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 1 Viewed: 540 times \| Downloaded: 178 times Tags (5): beanshell \| maxd \| microarray \| pathway \| sbml	View Download (v1)
Taverna 1 Original Uploader Peter Li	Query Maxd microarray database (v1) Created: 14/11/07 @ 16:01:50 \| Last updated: 22/11/07 @ 12:06:32 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Retrieves data from the maxd database given name of data set Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 122 times \| Downloaded: 77 times Tags (3): beanshell \| maxd \| microarray	View Download (v1)