User: Franck Tanoh
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Name: Franck Tanoh Joined: Wednesday 01 August 2007 @ 15:21:20 (GMT) Last seen: Thursday 17 March 2011 @ 10:26:23 (GMT) Email (public): Not specified Website: Not specified Location: United Kingdom |
Franck Tanoh has been credited 35 times Franck Tanoh has an average rating of: 3.7 / 5 (10 ratings in total) for their items |
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1. EntrezGeneId_to_GOFunction
2. get_enzymes_by_gene
3. get_enzymes_by_compound
4. get_elements_by_pathway
5. get_element_relations_by_pathway
6. get_drugs_by_pathways
7. get_compounds_by_reaction
8. get_compounds_by_pathway
9. get_best_best_neighbors_by_gene
10. color_pathway_by_objects
11. color_pathway_by_elements
12. btit
13. binfo
14. bget
15. bfind
16. bconv
17. Retrieve_abstract_from_Medline
18. BLASTP with simplified results returned
19. Get weather information
20. getUPIForSequence workflow
21. Get cities by country name
22. Get weather information
23. Example of a conditional execution workflow
24. Daily Dilbert
25. conditional branch
26. keggID to Kegg pathways with BioMoby services
27. BLASTP with simplified results returned
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Created: 13/05/10 @ 12:07:48 | Last updated: 13/05/10 @ 12:09:51
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
The workflow takes a list of Entrez gene ids and returns the corresponding GO function definitions.
Example value:
1306
486
4712
108
9912
7639
23786
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Created: 08/10/08 @ 16:37:24
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Retrieve all the EC numbers which are assigned to a given gene
Input example:
eco:b0002
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Created: 08/10/08 @ 16:30:58
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Retrieve all enzymes which have a link to a given compound id
Input example:
cpd:C00345
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Created: 08/10/08 @ 16:25:59
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Retrieve all objects on specified pathway get_elements_by_pathway
Input example:
path:bsu00010
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Created: 08/10/08 @ 16:19:51
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Retrieve all objects and relations on specified pathway
Input example:
path:bsu00010
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Created: 07/10/08 @ 17:05:11
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Retrieves all drugs on the specified pathway.
input example: path:map07025 ; path:eco00020
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Created: 07/10/08 @ 16:58:38
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Retrieve all compounds which have a link to a given reaction_id
Example on input:
rn:R00100
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Created: 07/10/08 @ 16:49:18
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Retrieves all compounds on the specified pathway
Example of input:
path:eco00020
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Created: 02/10/08 @ 13:41:05
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Search the best-best neighbor of a gene in all organisms.
Example of input:
gene_id: eco:b0002
offset: 1
limit: 10
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Original Uploader |
Created: 01/10/08 @ 17:03:41 | Last updated: 01/10/08 @ 17:06:10
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Color given objects on a pathway map with specified colors and return the URL of the colored image. In the KEGG pathway maps, a gene or enzyme is represented by a rectangle and a compound is shown as a small circle.
Example of input:
pathway_id:
path:eco00260
object_list: (to add as list)
eco:b0514
eco:b2913
fg_color: (to add as list)
blue
orange
bg_color: (to add as list)
red
orange
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Original Uploader |
Created: 30/09/08 @ 18:13:47 | Last updated: 01/10/08 @ 17:11:38
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Color the objects (rectangles and circles on a pathway map) corresponding to the given 'element_id_list' with the specified colors and return the URL of the colored image.
Example of inputs:
pathway_id:
path:bsu00010
element_list: (to add as list)
78
79
fg_color_list:(to add as list)
red
blue
bg_color_list: (to add as list)
green
yellow
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Created: 30/09/08 @ 17:44:11 | Last updated: 30/09/08 @ 17:46:34
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Retrieve definitions of given database entries available on GenomeNet database.
Example of input:
hsa:1798
mmu:13478
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Original Uploader |
Created: 30/09/08 @ 14:30:08 | Last updated: 30/09/08 @ 14:31:27
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Show the version information of a specificied database.
Example of input:
"gb" for Genbank database
"sp" for swissprot database
"emb" for embl database
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Original Uploader |
Created: 29/09/08 @ 13:58:00
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Retrieve database entries specified by a list of entry_id. Number of entry_id retrieves at a time is restricted up to 100
Example of input:
eco:b0002 hin:tRNA-Cys-1
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Created: 29/09/08 @ 13:21:12 | Last updated: 29/09/08 @ 13:23:39
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Used for searching entries by keywords. User needs to specify a database from those which are supported by DBGET system before keywords. List of databases available at : http://www.genome.jp/dbget/
Example of input parameter: gb E-cadherin human
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Original Uploader |
Created: 29/09/08 @ 12:13:41 | Last updated: 29/09/08 @ 12:29:01
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
Converts external IDs to KEGG IDs.External database: NCBI GI, NCBI GeneID, GenBank , UniGene , OMIM. Database prefix: ncbi-gi:, ncbi-geneid:, genbank: ,unigene: , uniprot: , omim:
Example of input parameter:
ncbi-gi:10047090
ncbi-geneid:14751
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Original Uploader |
Created: 17/09/08 @ 15:22:56 | Last updated: 17/09/08 @ 15:24:22
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow retrieves Medline Abstracts given PMIDs (PubMed id)
You can use: 9879 as input example to test this workflow
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Original Uploader |
Created: 22/07/08 @ 15:53:06 | Last updated: 22/07/08 @ 16:29:55
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers.
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Original Uploader |
Created: 17/06/08 @ 16:25:49 | Last updated: 20/06/08 @ 14:48:32
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Attributions:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
Get the weather forcast of the day for you city. Info display: wind, visibility, temperature, sky conditions and pressure. The default value Stian's home country.
Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 258 times | Downloaded: 93 times This Workflow has no tags! |
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Original Uploader |
Created: 06/06/08 @ 09:59:59 | Last updated: 06/06/08 @ 10:07:06
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Given a sequence retrieve the UPI (UniProt Archive (UniParc)) identifier.
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Original Uploader |
Created: 15/02/08 @ 23:20:04
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Get all the cities supported by the 'Get Weather info' workflow.... just enter your country name as input.
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Original Uploader |
Created: 15/02/08 @ 23:17:07 | Last updated: 15/02/08 @ 23:21:19
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
Get the weather forcast of the day for you city.
Info display: wind, visibility, temperature, sky conditions and pressure.
The default value is my home town.
To find out any supported city run the 'Get cities by country name' workflow
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Original Uploader |
Created: 03/10/07 @ 18:36:30 | Last updated: 27/01/08 @ 21:09:41 License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
If the input is true the workflow returns the temperature in Celsius, if false the temperature in Fahrenheit is returned.
Rating: 3.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 2 | Citations: 0 Viewed: 111 times | Downloaded: 57 times Tags (2): |
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Original Uploader |
Created: 03/10/07 @ 18:36:29 | Last updated: 06/03/08 @ 16:59:35 License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
Retrieves the Daily Dilbert image ....to start the day with
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Original Uploader |
Created: 03/10/07 @ 18:36:29 License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
Example of a conditional execution workflow. use 'false' or 'true' as input
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Original Uploader |
Created: 03/10/07 @ 18:36:22 | Last updated: 05/03/08 @ 13:59:55 License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
This workflow retrieves KEGG pathway id and image given a KEGG gene id.
e.g hsa:6402 or eco:b0002
Rating: 4.0 / 5 (1 rating) | Versions: 3 | Reviews: 0 | Comments: 2 | Citations: 0 Viewed: 265 times | Downloaded: 121 times Tags (3):
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Original Uploader |
Created: 03/10/07 @ 18:36:12 | Last updated: 06/03/08 @ 17:01:32 License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
This workflow Performs a blastp search on protein sequence, extracts sequence id within the blast report and retrives the corresponding seuqences.
Rating: 4.0 / 5 (2 ratings) | Versions: 2 | Reviews: 0 | Comments: 2 | Citations: 0 Viewed: 194 times | Downloaded: 58 times Tags (3): |
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