Ci User: Franck Tanoh Admin_badge

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Name: Franck Tanoh

Joined: Wednesday 01 August 2007 @ 15:21:20 (BST)

Last seen: Tuesday 09 December 2008 @ 14:15:10 (GMT)

Email (public): Not specified

Website: Not specified

Location: Cote d'Ivoire

19 Friends

2 Groups (admin)

4 Groups (member)

3 Packs

2 Files

26 Workflows

5 Favourites

Franck Tanoh has been credited 28 times

Franck Tanoh has an average rating of:

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Taverna 1

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Workflow get_enzymes_by_gene (v1)

Created: 08/10/08 @ 16:37:25

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Get_enzymes_by_gene
Retrieve all the EC numbers which are assigned to a given gene Input example: eco:b0002

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Taverna 1

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Workflow get_enzymes_by_compound (v1)

Created: 08/10/08 @ 16:30:59

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Get_enzymes_by_compound
Retrieve all enzymes which have a link to a given compound id Input example: cpd:C00345

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Taverna 1

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Workflow get_elements_by_pathway (v1)

Created: 08/10/08 @ 16:26:00

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Get_elements_by_pathway
Retrieve all objects on specified pathway get_elements_by_pathway Input example: path:bsu00010

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Taverna 1

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Workflow get_element_relations_by_pathway (v1)

Created: 08/10/08 @ 16:19:52

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Get_element_relations_by_pathway
Retrieve all objects and relations on specified pathway Input example: path:bsu00010

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Taverna 1

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Workflow get_drugs_by_pathways (v1)

Created: 07/10/08 @ 17:05:11 | Last updated: 07/10/08 @ 17:05:12

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Get_drugs_by_pathways
Retrieves all drugs on the specified pathway. input example: path:map07025 ; path:eco00020

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Taverna 1

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Workflow get_compounds_by_reaction (v1)

Created: 07/10/08 @ 16:58:39

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Get_compounds_by_reaction
Retrieve all compounds which have a link to a given reaction_id Example on input: rn:R00100

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Taverna 1

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Workflow get_compounds_by_pathway (v1)

Created: 07/10/08 @ 16:49:19

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Get_compounds_by_pathway
Retrieves all compounds on the specified pathway Example of input: path:eco00020

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Taverna 1

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Workflow get_best_best_neighbors_by_gene (v1)

Created: 02/10/08 @ 13:41:06

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Get_best_best_neighbors_by_gene_3111_1
Search the best-best neighbor of a gene in all organisms. Example of input: gene_id: eco:b0002 offset: 1 limit: 10

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Taverna 1

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Workflow color_pathway_by_objects (v1)

Created: 01/10/08 @ 17:03:41 | Last updated: 01/10/08 @ 17:06:10

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Color_pathway_by_objects_27139_1
Color given objects on a pathway map with specified colors and return the URL of the colored image. In the KEGG pathway maps, a gene or enzyme is represented by a rectangle and a compound is shown as a small circle. Example of input: pathway_id: path:eco00260 object_list: (to add as list) eco:b0514 eco:b2913 fg_color: (to add as list) blue orange bg_color: (to add as list) red orange

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Taverna 1

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Workflow color_pathway_by_elements (v2)

Created: 30/09/08 @ 18:13:48 | Last updated: 01/10/08 @ 17:11:38

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Color_pathway_by_elements_4572_2
Color the objects (rectangles and circles on a pathway map) corresponding to the given 'element_id_list' with the specified colors and return the URL of the colored image. Example of inputs: pathway_id: path:bsu00010 element_list: (to add as list) 78 79 fg_color_list:(to add as list) red blue bg_color_list: (to add as list) green yellow

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Taverna 1

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Workflow btit (v1)

Created: 30/09/08 @ 17:44:12 | Last updated: 30/09/08 @ 17:46:34

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Btit_11521_1
Retrieve definitions of given database entries available on GenomeNet database. Example of input: hsa:1798 mmu:13478

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Taverna 1

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Workflow binfo (v1)

Created: 30/09/08 @ 14:30:08 | Last updated: 30/09/08 @ 14:31:28

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Binfo_29039_1
Show the version information of a specificied database.  Example of input: "gb"  for Genbank database "sp" for swissprot database "emb" for embl database

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Taverna 1

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Workflow bget (v1)

Created: 29/09/08 @ 13:58:00

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Bget_3596_1
Retrieve database entries specified by a list of entry_id. Number of entry_id retrieves at a time is restricted up to 100 Example of input: eco:b0002 hin:tRNA-Cys-1

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Taverna 1

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Workflow bfind (v1)

Created: 29/09/08 @ 13:21:13 | Last updated: 29/09/08 @ 13:23:39

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Bfind_28176_1
Used for searching entries by keywords. User needs to specify a database from those which are supported by DBGET system before keywords. List of databases available at : http://www.genome.jp/dbget/ Example of input parameter: gb E-cadherin human

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Taverna 1

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Workflow bconv (v1)

Created: 29/09/08 @ 12:13:41 | Last updated: 29/09/08 @ 12:29:02

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Untitled_3697_1
Converts external IDs to KEGG IDs.External database:  NCBI GI, NCBI GeneID, GenBank , UniGene , OMIM. Database prefix: ncbi-gi:, ncbi-geneid:, genbank: ,unigene: , uniprot: , omim: Example of input parameter: ncbi-gi:10047090 ncbi-geneid:14751

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Taverna 1

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Workflow Retrieve_abstract_from_Medline (v1)

Created: 17/09/08 @ 15:22:56 | Last updated: 17/09/08 @ 15:24:22

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Retrieve_abstract_from_medline_28778_1
This workflow retrieves Medline Abstracts given PMIDs (PubMed id) You can use: 9879 as input example to test this workflow

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Taverna 1

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Workflow BLASTP with simplified results returned (v1)

Created: 22/07/08 @ 15:53:06 | Last updated: 22/07/08 @ 16:29:55

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Blastp_with_simplified_results_returned_27635_1
Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers.

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Taverna 1

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Workflow Get weather information (v3)

Created: 17/06/08 @ 16:25:50 | Last updated: 20/06/08 @ 14:48:33

Credits: User Franck Tanoh User Stian Soiland-Reyes

Attributions: Workflow Get weather information Workflow Get cities by country name

License: Creative Commons Attribution-Share Alike 3.0 License

Get_weather_information_22051_3
Get the weather forcast of the day for you city. Info display: wind, visibility, temperature, sky conditions and pressure. The default value Stian's home country.

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Taverna 1

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Workflow getUPIForSequence workflow (v2)

Created: 06/06/08 @ 09:59:59 | Last updated: 06/06/08 @ 10:07:06

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Getupiforsequence_workflow_25541_2
Given a sequence retrieve the UPI (UniProt Archive (UniParc)) identifier.

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Taverna 1

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Workflow Get cities by country name (v1)

Created: 15/02/08 @ 23:20:04

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Get_cities_by_country_name_5889_1
Get all the cities supported by the 'Get Weather info' workflow.... just enter your country name as input.

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Taverna 1

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Workflow Get weather information (v1)

Created: 15/02/08 @ 23:17:08 | Last updated: 15/02/08 @ 23:21:19

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 License

Get_weather_information_32091_1
Get the weather forcast of the day for you city. Info display: wind, visibility, temperature, sky conditions and pressure. The default value is my home town. To find out any supported city run the 'Get cities by country name' workflow

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Taverna 1

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Workflow Example of a conditional execution workflow (v2)

Created: 03/10/07 @ 18:36:30 | Last updated: 27/01/08 @ 21:09:41

License: Creative Commons Attribution-NoDerivs 3.0 License

Example_of_a_conditional_execution_workflow_9051
If the input is true the workflow returns the temperature in Celsius, if false the temperature in Fahrenheit is returned.

Rating: 3.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 4 | Citations: 0

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Taverna 1

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Workflow conditional branch (v2)

Created: 03/10/07 @ 18:36:29

License: Creative Commons Attribution-NoDerivs 3.0 License

Example_of_a_conditional_execution_workflow_12611
Example of a conditional execution workflow. use 'false' or 'true' as input

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Taverna 1

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Workflow Daily Dilbert (v2)

Created: 03/10/07 @ 18:36:29 | Last updated: 06/03/08 @ 16:59:35

License: Creative Commons Attribution-NoDerivs 3.0 License

D_20156
Retrieves the Daily Dilbert image ....to start the day with

Rating: 4.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 1 | Citations: 0

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Taverna 1

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Workflow keggID to Kegg pathways with BioMoby services (v3)

Created: 03/10/07 @ 18:36:22 | Last updated: 05/03/08 @ 13:59:56

License: Creative Commons Attribution-NoDerivs 3.0 License

Keggid_to_kegg_pathways_with_biomoby_services_13382_3
This workflow retrieves KEGG pathway id and image given a KEGG gene id. e.g hsa:6402 or eco:b0002

Rating: 4.0 / 5 (1 rating) | Versions: 3 | Reviews: 0 | Comments: 2 | Citations: 0

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Taverna 1

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Workflow BLASTP with simplified results returned (v2)

Created: 03/10/07 @ 18:36:12 | Last updated: 06/03/08 @ 17:01:32

License: Creative Commons Attribution-NoDerivs 3.0 License

Blastp_with_simplified_results_returned_14277
This workflow Performs a blastp search on protein sequence, extracts sequence id within the blast report and retrives the corresponding seuqences.

Rating: 4.0 / 5 (2 ratings) | Versions: 2 | Reviews: 0 | Comments: 2 | Citations: 0

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