User: Anthony Underwood

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Name: Anthony Underwood

Joined: Friday 20 July 2007 17:12:36 (UTC)

Last seen: Friday 30 November 2012 14:14:31 (UTC)

Email (public): email2ants [at] gmail.com

Website: http://www.hpa.org.uk/cfi/bioinformatics/

Location: Not specified

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Molecular Biologist at heart but with a geek inside. An almost fanatical love of Apple Macs (don't get me started!)

Working on prokaryotic pathogen genomics, molecular phylogenetics and modelling of VNTR evolution.

Programming skills in Perl, Ruby and Java and whatever is the latest cool thing (one of the cardinal sins!)


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Network-member Rooting unrooted trees

Unique name: rooting_unrooted_trees
Created: Friday 20 July 2007 17:44:36 (UTC)

Assuming the following is true: In the absence of a good outgroup the root may be positioned by assuming approximately equal evolutionary rates over all the branches. In this way the root is put at the midpoint of the longest pathway between two OTUs. This way of rooting is called mid-point rooting. I am trying to implement a way of rooting an unrooted tree using ruby. Having been to BOSC...

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