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[untitled]

Workflow Entry: [untitled]

Created at: 16/03/10 @ 16:33:35

Version 1 (of 1)

Version created on: 16/03/10 @ 16:33:37 by: Paul Fisher | Revision comments Expand

Title: [untitled]

Type: Taverna 2

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http://www.myexperiment.org/workflows/1132/download?version=1
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Workflow Components

Authors (0)

Titles (0)

Descriptions (0)

Inputs (1)

Name	Description
gene_ids

Processors (4)

Name	Type	Description
Nested_workflow	workflow
Nested_workflow_2	workflow
get_compounds_by_pathway	wsdl	See the Service entry for this web service.
get_pathways_by_genes	wsdl	See the Service entry for this web service.

Beanshells (6)

Name	Inputs	Outputs
remove_nulls	input	output
pathway_and_abstract	pathway abstracts	output
extract_terms	input	output
add_MeSH_to_string	input	output
remove_Nulls	input	output
concat_abstract_ids	id abstract_text date_text	output

Outputs (3)

Name	Description
pathway_descriptions
compound_ids
pathway_abstracts

Datalinks (7)

Source	Sink
get_pathways_by_genes:return	Nested_workflow:kegg_pathway_id_list
Nested_workflow:pathway_descriptions	Nested_workflow_2:pathway_descriptions
get_pathways_by_genes:return	get_compounds_by_pathway:pathway_id
gene_ids	get_pathways_by_genes:genes_id_list
Nested_workflow:pathway_descriptions	pathway_descriptions
get_compounds_by_pathway:return	compound_ids
Nested_workflow_2:pathway_abstracts	pathway_abstracts

Coordinations (0)

Information Workflow Type

Taverna 2

Information Original Uploader

Paul Fisher

Information License

All versions of this Workflow are licensed under:

Information Credits (1)

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Paul Fisher

Information Attributions (0)

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None

Information Tags (6)

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Information Shared with Groups (1)

eLicoTutorial

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Information Favourited By (0)

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Information Statistics

394 viewings

430 downloads

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Citations (0)

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Version History

Earliest Version:
[1] - [untitled]

Created on: Tuesday 16 March 2010 @ 16:33:37 (GMT)

Created by: Paul Fisher

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Other workflows that use similar services (111)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 2

Original Uploader

Paul Fisher

microRNA to KEGG Pathways and Abstracts (v1)

Created: 17/03/10 @ 10:53:02

Credits: Paul Fisher

Attributions: Pathways and Gene annotations for QTL region

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Workflow takes in a text file of microRNAs from microCOSM (at the EBI) and outputs a list of KEGG pathway information, including genes in pathways and pathway abstracts from PubMed. The results can then be used in various text mining applications/workflows to rank the results against a given disease.Workflow takes in a file of microRNAs

Rating: 5.0 / 5 (1 rating) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 150 times | Downloaded: 2 times

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