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Items tagged with "compound" (7)

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Workflows (7)
Taverna 1

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Workflow get_compounds_by_pathway (v1)

Created: 07/10/08 @ 16:49:19

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Get_compounds_by_pathway
Retrieves all compounds on the specified pathway Example of input: path:eco00020

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 21 times | Downloaded: 10 times

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Taverna 1

Original Uploader

Workflow get_compounds_by_reaction (v1)

Created: 07/10/08 @ 16:58:39

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Get_compounds_by_reaction
Retrieve all compounds which have a link to a given reaction_id Example on input: rn:R00100

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 14 times | Downloaded: 2 times

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Taverna 1

Original Uploader

Workflow get_enzymes_by_compound (v1)

Created: 08/10/08 @ 16:30:59

Credits: User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Get_enzymes_by_compound
Retrieve all enzymes which have a link to a given compound id Input example: cpd:C00345

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 14 times | Downloaded: 3 times

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Taverna 1

Original Uploader

Workflow Search InChI in ChemSpider (v1)

Created: 30/03/09 @ 09:24:33 | Last updated: 30/03/09 @ 09:43:08

Credits: User Michael Gerlich

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Search_inchi_in_chemspider
This workflows queries ChemSpider for compound information and compound images. Note that a Chemspider security token is needed in order to access some of the ChemSpider services (receive one by registering at ChemSpider). Possible search terms might be InChI codes, ChemSpider identifiers or names.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 36 times | Downloaded: 14 times

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Taverna 1

Original Uploader

Workflow Search InChI in NCBI eSearch (pccompound) (v1)

Created: 30/03/09 @ 09:26:25 | Last updated: 30/03/09 @ 09:47:01

Credits: User Michael Gerlich

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Search_inchi_in_ncbi_esearch__pccompound_
This workflow takes in a search term (e.g. InChI) for search in PubChem pccompound database. The result is an xml file containing summary information about the search term and also a compound image and the compound webpage fetched from Pubchem.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 70 times | Downloaded: 32 times

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Taverna 1

Original Uploader

Workflow MassBank to KEGG (v1)

Created: 30/03/09 @ 09:30:33 | Last updated: 30/03/09 @ 09:49:14

Credits: User Michael Gerlich

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Kegg_workflow
Workflow that queries MassBank DB to retrieve database identifiers (KEGG, PubChem, InChI) and continue search with them to retrieve pathways from KEGG for given compound identifier,searches PubChem via eutils and PUG, queries ChemSpider for compound information and image. Note: Usage of ChemSpider web services requires a valid security token - receive one by registering at ChemSpider (look at your profile to see your token)

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 128 times | Downloaded: 0 times

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Taverna 1

Original Uploader

Workflow inchi to Chebi (v1)

Created: 22/05/09 @ 16:07:51 | Last updated: 22/05/09 @ 16:07:52

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Inchi_to_chebi
This workflow converts an inchi string to a chebi id.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 17 times | Downloaded: 1 time

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