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InviteWorkflow Entry: microRNA to KEGG Pathways and Abstracts
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 Version 1
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Version created on:
17/03/10 @ 10:53:06
by:
Paul Fisher
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Title: microRNA to KEGG Pathways and Abstracts
Type: Taverna 2
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Description
Workflow takes in a text file of microRNAs from microCOSM (at the EBI) and outputs a list of KEGG pathway information, including genes in pathways and pathway abstracts from PubMed. The results can then be used in various text mining applications/workflows to rank the results against a given disease.
Workflow takes in a file of microRNAs
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Original Uploader |
Created: 03/10/07 @ 18:36:00 | Last updated: 03/12/09 @ 16:16:31 License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in the cow, Bos taurus. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. As the Cow genome is currently unfinished, the workflow subsequently maps the cow ensembl gene ids to human orthologues. Entrez and UniProt identifiers are then identified...
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 1 | Citations: 0 Viewed: 102 times | Downloaded: 48 times Tags (1): |
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Created: 08/07/09 @ 16:26:13 | Last updated: 14/12/09 @ 11:59:14
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License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in Arabidopsis thaliana. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. The UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG pathway database.
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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 63 times | Downloaded: 30 times Tags (15): |
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Non-Information Resource URI: http://www.myexperiment.org/workflows/1138
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Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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