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Items tagged with "text mining" (9)

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Network-member National Centre for Text Mining (NaCTeM)

Unique name: nactem Created: Monday 19 May 2008 @ 16:56:09 (BST)

A group representing researches at the National Centre for Text Mining - www.nactem.ac.uk The National Centre for Text Mining (NaCTeM) is the first publicly-funded text mining centre in the world. We provide text mining services in response to the requirements of the UK academic community. NaCTeM is operated by the University of Manchester with close collaboration with the University of Tokyo....

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Workflows (8)
Taverna 1

Original Uploader

Workflow GeneIlluminator_Disambiguate (v2)

Created: 27/02/08 @ 00:43:33 | Last updated: 03/03/08 @ 22:11:52

Credits: User Pieter Neerincx User Alako

License: Creative Commons Attribution-Share Alike 3.0 License

Geneilluminator_disambiguate_2501_2
Example workflow demonstrating how to use GeneIlluminator_Disambiguate, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service provides GI_Clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. Provides also gene symbol aliases associated to the input gene symbol. (This is the same output as the one from the GeneIlluminator_GetClusters service.) In addition this service takes an Organi...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 445 times | Downloaded: 345 times

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Taverna 1

Original Uploader

Workflow GeneIlluminator_GetClusters (v2)

Created: 27/02/08 @ 00:46:22 | Last updated: 03/03/08 @ 22:11:18

Credits: User Pieter Neerincx User Alako

License: Creative Commons Attribution-Share Alike 3.0 License

Geneilluminator_getclusters_23792_2
Example workflow demonstrating how to use GeneIlluminator_GetClusters, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service provides GI_Clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. Provides also gene symbol aliases associated to the input gene symbol. (Use GeneIlluminator_GetGraph for a graphical representation of the clusters or GeneIlluminator_Disambiguate to get the mos...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 420 times | Downloaded: 363 times

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Taverna 1

Original Uploader

Workflow GeneIlluminator_GetGraph (v2)

Created: 27/02/08 @ 00:48:40 | Last updated: 03/03/08 @ 22:10:55

Credits: User Pieter Neerincx User Alako

License: Creative Commons Attribution-Share Alike 3.0 License

Geneilluminator_getgraph_2289_2
Example workflow demonstrating how to use GeneIlluminator_GetGraph, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service uses GeneIlluminator to create clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. GeneIlluminator provides also aliases associated to the input gene symbol. Finally, a graphical overview of the clusters and gene symbols is created in SVG format and returned to ...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 398 times | Downloaded: 397 times

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Taverna 1

Original Uploader

Workflow GeneIlluminator_GetPubMedQuery (v2)

Created: 27/02/08 @ 00:49:45 | Last updated: 03/03/08 @ 22:08:42

Credits: User Pieter Neerincx User Alako

License: Creative Commons Attribution-Share Alike 3.0 License

Geneilluminator_getpubmedquery_6033_2
Example workflow demonstrating how to use GeneIlluminator_GetPubMedQuery, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service uses GeneIlluminator to create clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. GeneIlluminator provides also aliases associated to the input gene symbol. Finally, using the cluster characteristics it creates a boolean PubMed query that could be used to...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 444 times | Downloaded: 386 times

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Taverna 1

Original Uploader

Workflow Pathway to Pubmed (v2)

Created: 09/03/08 @ 15:03:12 | Last updated: 08/07/08 @ 12:13:06

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 License

Pathway_to_pubmed_25676_2
This workflow takes in a list of KEGG pathway descriptions and searches the PubMed database for corresponding articles. Any matches to the pathways are then retrieved (abstracts only). These abstracts are then returned to the user.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 771 times | Downloaded: 535 times

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Taverna 1

Original Uploader

Workflow Termine Webservice (v1)

Created: 19/05/08 @ 17:02:05 | Last updated: 19/05/08 @ 17:24:13

Credits: User Brian Rea Network-member National Centre for Text Mining (NaCTeM)

License: Creative Commons Attribution 3.0 License

Termineworkflow_11318_1
Termine is a service provided by the National Centre for Text Mining (NaCTeM) to assist in the discovery of terms in text. More information on the Termine service can be found here. This workflow represents the simplest method of using Termine. The input represents a text string with the output being an string containing a representation of the list of terms, with their C-Value scores (representing significance in the text), in a simple xml format. Other variations of this tools will be adde...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 242 times | Downloaded: 192 times

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Taverna 1

Original Uploader

Workflow sent+genia+termine (v1)

Created: 20/05/08 @ 11:04:00 | Last updated: 20/05/08 @ 11:41:19

Credits: User scottpiao Network-member National Centre for Text Mining (NaCTeM)

License: Creative Commons Attribution 3.0 License

Sent_genia_termine_2182_1
This workflow combines three web services developed in the National Centre for Text Mining (NaCTeM) of the University of Manchester. A set of parameters are exposed for the users to adjust the input/output formats.  Given a input of plain text, this workflow produces three outputs: sentence list, POS tagged text, and term list with their C-Value scores (indicating termhood). The parameters are set to their default values. The parameter of "output_format" can be set to either &q...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 352 times | Downloaded: 220 times

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Taverna 1

Original Uploader

Workflow EBI_Whatizit (v1)

Created: 09/07/08 @ 05:14:28 | Last updated: 09/07/08 @ 05:14:29

Credits: User Hamish McWilliam

License: Creative Commons Attribution 3.0 License

Ebi_whatizit_12981_1
Perform a text-mining analysis of an input text document using the EBI's Whatizit tool (http://www.ebi.ac.uk/webservices/whatizit/info.jsf). Whatizit provides a number of text-mining pipelines which can can detect various terms of biological interest in text documents. For example finding gene names and mapping them to UniProtKB identifiers, finding chemical terms and mapping them to ChEBI, etc.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 184 times | Downloaded: 186 times

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