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InviteWorkflow Entry: KEGG pathways common to both QTL and microarray based investigations
| Citations (1) | Version History | Reviews (0) | Comments (0) |
 Version 3 (latest)
(of 3)
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Version created on:
24/11/09 @ 17:14:43
by:
Paul Fisher
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Revision comments 
Last edited on: 03/12/09 @ 15:28:50 by: Paul Fisher
Title: KEGG pathways common to both QTL and microarray based investigations
Type: Taverna 1
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Description
This workflow takes in two lists of KEGG pathway ids. These are designed to come from pathways found from genes in a QTL (Quantitative Trait Loci) region, and from pathways found from genes differentially expressed in a microarray study. By identifying the intersecting pathways from both studies, a more informative picture is obtained of the candidate processes involved in the expression of a phenotype.
Example input for this workflow is given below (as newline separated values).
qtl_pathways:
path:mmu04060
path:mmu04370
path:mmu04510
path:mmu04060
path:mmu04670
path:mmu00040
path:mmu00150
path:mmu00500
path:mmu00860
microarray_pathways:
path:mmu04060
path:mmu04370
path:mmu00040
path:mmu00150
path:mmu00500
path:mmu00860
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http://www.myexperiment.org/workflows/13/download?version=3
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Statistics
1. Fisher P, Hedeler C, Wolstencroft K, Hulme H, Noyes H, Kemp S, Stevens R, Brass A, A systematic strategy for large-scale analysis of genotype phenotype correlations: identification of candidate genes involved in African trypanosomiasis., Nucleic Acids Research, 20 August 2007, http://nar.oxfordjournals.org/cgi/content/full/35/16/5625
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[1] - KEGG pathways common to both QTL and microarray based investigations
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[2] - KEGG pathways common to both QTL and microarray based investigations
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[3] - KEGG pathways common to both QTL and microarray based investigations
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Original Uploader |
Created: 12/01/12 @ 09:46:31 | Last updated: 12/01/12 @ 14:54:37
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Attributions:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow accepts a list of genbank gene identifiers and returns descriptions of gene functions and a list of all pathways each gene is involved in, according to the KEGG database.
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 6 times | Downloaded: 8 times Tags (8): |
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Original Uploader |
Created: 26/12/08 @ 07:52:41 | Last updated: 26/12/08 @ 07:53:11
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 75 times | Downloaded: 13 times This Workflow has no tags! |
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Non-Information Resource URI: http://www.myexperiment.org/workflows/13
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Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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