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InviteWorkflow Entry: KEGG pathways common to both QTL and microarray based investigations
| Citations (1) | Version History | Reviews (0) | Comments (0) |
 Version 3 (latest)
(of 3)
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Version created on:
24/11/09 @ 17:14:43
by:
Paul Fisher
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Revision comments 
Last edited on: 03/12/09 @ 15:28:50 by: Paul Fisher
Title: KEGG pathways common to both QTL and microarray based investigations
Type: Taverna 1
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Description
This workflow takes in two lists of KEGG pathway ids. These are designed to come from pathways found from genes in a QTL (Quantitative Trait Loci) region, and from pathways found from genes differentially expressed in a microarray study. By identifying the intersecting pathways from both studies, a more informative picture is obtained of the candidate processes involved in the expression of a phenotype.
Example input for this workflow is given below (as newline separated values).
qtl_pathways:
path:mmu04060
path:mmu04370
path:mmu04510
path:mmu04060
path:mmu04670
path:mmu00040
path:mmu00150
path:mmu00500
path:mmu00860
microarray_pathways:
path:mmu04060
path:mmu04370
path:mmu00040
path:mmu00150
path:mmu00500
path:mmu00860
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http://www.myexperiment.org/workflows/13/download?version=3
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Statistics
1. Fisher P, Hedeler C, Wolstencroft K, Hulme H, Noyes H, Kemp S, Stevens R, Brass A, A systematic strategy for large-scale analysis of genotype phenotype correlations: identification of candidate genes involved in African trypanosomiasis., Nucleic Acids Research, 20 August 2007, http://nar.oxfordjournals.org/cgi/content/full/35/16/5625
Earliest Version:
[1] - KEGG pathways common to both QTL and microarray based investigations
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[2] - KEGG pathways common to both QTL and microarray based investigations
Latest Version:
[3] - KEGG pathways common to both QTL and microarray based investigations
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Other workflows that use similar services
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|
Original Uploader |
Created: 20/01/12 @ 09:32:55 | Last updated: 20/01/12 @ 09:32:56
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in the mouse, Mus musculus. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. The Entrez and UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG path...
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 14 times | Downloaded: 4 times This Workflow has no tags! |
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|
Original Uploader |
Created: 15/11/10 @ 12:25:01 | Last updated: 15/11/10 @ 12:28:12
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow searches for genes which were found to be differentially expressed from a microarray study in the mouse, Mus musculus. The workflow requires an input of gene ref_seq identifiers. Data is then extracted from BioMart to annotate each of the genes found for each ref_seq id. The Entrez and UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to search for pathways in the KEGG pathway database.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 62 times | Downloaded: 35 times Tags (34): |
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Linked Data
Non-Information Resource URI: http://www.myexperiment.org/workflows/13
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Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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