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InviteWorkflow Entry: Human Microarray Analysis
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 Version 1
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Version created on:
08/02/08 @ 14:30:17
by:
Paul Fisher
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Last edited on: 03/12/09 @ 16:50:30 by: Paul Fisher
Title: Human Microarray Analysis
Type: Taverna 1
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Description
This workflow takes in probesets from and AffyMetrix Affy HG U133A micorarray experiment and returns: genes ; gene start and end positions; chromosome where genes reside; ensembl trasncripts; SwissProt ids. The final output of the workflow is a list of candidate pathways which are linked to the genes expressed in the microarray data.
Example input for this workflow is:
212283_at
221634_at
220399_at
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Original Uploader |
Created: 08/07/09 @ 16:28:34
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License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
This workflow searches for genes which are found to be differentially expressed in a microarray study using Arabidopsis thaliana. The workflow requires an input of a list of differentially expressed AffyMetrix Probeset identifiers. Data is then extracted from BioMart to annotate each of the genes. The UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG pathway database.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 145 times | Downloaded: 30 times Tags (19): |
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Original Uploader |
Created: 12/07/08 @ 09:15:13 | Last updated: 12/07/08 @ 20:20:52
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 73 times | Downloaded: 37 times Tags (1): |
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Non-Information Resource URI: http://www.myexperiment.org/workflows/143
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Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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Paul, do you have an example input to run this workflow?
It'll be very very useful....
cheers