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retrieve nucleotide sequence and do a BLAST with options from DDBJ Web services

Workflow Entry: retrieve nucleotide sequence and do a BLAST with options from DDBJ Web services

Created at: 21/07/10 @ 14:21:50 Last updated: 21/07/10 @ 14:21:52

Version 1 (of 1)

Version created on: 21/07/10 @ 14:21:50 by: Lebreton | Revision comments Expand

Title: retrieve nucleotide sequence and do a BLAST with options from DDBJ Web services

Type: Taverna 1

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Description

retrieve nucleotide sequence and do a BLAST with options from DDBJ Web services

informations on Web services available at http://xml.nig.ac.jp/index.html

example

accession : AB000100
database : DDBJ
program : blastn
param : -b 5 -m 7

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http://www.myexperiment.org/workflows/1456/download?version=1
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Workflow Components

Inputs (4)

Name	Description
bioinformatics_programs
sequence_database
bioinformatics_parameter
DDBJ_accession

Processors (2)

Name	Type	Description
getFASTA_DDBJEntry	arbitrarywsdl	Get DDBJ entry of FASTA Format by Accession Number See the Service entry for this web service.
searchParam	arbitrarywsdl	Execute Blast with parameter See the Service entry for this web service.

Beanshells (0)

Outputs (1)

Name	Description
blast_report_ddbj

Links (6)

Source	Sink
getFASTA_DDBJEntry:Result	searchParam:query
bioinformatics_programs	searchParam:program
sequence_database	searchParam:database
bioinformatics_parameter	searchParam:param
DDBJ_accession	getFASTA_DDBJEntry:accession
searchParam:Result	blast_report_ddbj

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Information Workflow Type

Taverna 1

Information Original Uploader

Lebreton

Information License

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Information Credits (1)

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Lebreton

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Information Statistics

60 viewings

317 downloads

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Citations (0)

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Version History

Earliest Version:
[1] - retrieve nucleotide sequence and do a BLAST with options from DDBJ Web services

Created on: Wednesday 21 July 2010 @ 14:21:50 (GMT)

Created by: Lebreton

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Other workflows that use similar services (51)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 1

Original Uploader

Lebreton

retrieve protein sequence and do a high speed BLAST from DDBJ Web services (v1)

Created: 01/09/10 @ 17:16:24 | Last updated: 01/09/10 @ 17:18:45

Credits: Lebreton

Attributions: retrieve protein sequence and do a high speed BLAST and extract position from DDBJ Web services

License: Creative Commons Attribution-Share Alike 3.0 Unported License

retrieve protein sequence and do a high speed BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : ddbjbct program : tblastn param : -b 100 -v 100

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 19 times | Downloaded: 13 times

Tags (6):

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Download (v1)

Taverna 1

Original Uploader

Lebreton

retrieve protein sequence and do a BLAST with options from DDBJ Web services (v1)

Created: 21/07/10 @ 13:24:56 | Last updated: 01/09/10 @ 17:37:48

Credits: Lebreton

License: Creative Commons Attribution-Share Alike 3.0 Unported License

retrieve protein sequence and do a BLAST with options from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html exxample accession : Q9NRA8 database : UNIPROT program : blastp param : -b 5 -m 7

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 17 times | Downloaded: 11 times

Tags (5):