KEIO Bioinformatics Web Service - a generating sequence logo image for a set of sequence retrieval via homology search

Created: 2010-08-13 14:02:59      Last updated: 2010-11-19 05:32:37

This workflow generates a sequence logo image for a set of amino acid sequences of FOXP2 gene, by downloading the amino acid sequences in Fasta format through Togo Web Service with UniProt identifiers (togoWS, provided by the G-language Genome Analysis Environment SOAP Service), running BLAST web service (runBLAST), retrieving a set of sequences from ID list (togoWS), aligning the sequence with MUSCLE (runMUSCLE), extracting a certain region from the alignment (extractalign, provided by Soaplab), and generating its sequence logo image (runWebLogo). See http://www.g-language.org/kbws/ for more information about Keio Bioinformatics Web Services.


This workflow generates a sequence logo image for a set of amino acid sequences of FOXP2, downloading the amino acid sequence in Fasta format through Togo Web Service with UniProt identifier, using BLAST web service (runBLAST), retrieving a set of sequence from ID list (togoWS), aligning the sequence with MUSCLE (runMUSCLE), extracting a certain region from the alignment (extractalign), and generating its sequence logo image (runWebLogo). See http://www.g-language.org/kbws/ for more information about KEIO Bioinformatics Web Service.

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