Log in
Register
Give us Feedback
InviteWorkflow Entry: KEIO Bioinformatics Web Service - a generating sequence logo image for a set of sequence retrieval via homology search
| Citations (0) | Version History | Reviews (0) | Comments (0) |
 Version 2 (latest)
(of 2)
|
Version created on:
19/11/10 @ 05:32:36
by:
cory (Kazuki Oshita)
|
Revision comments 
Title: KEIO Bioinformatics Web Service - a generating sequence logo image for a set of sequence retrieval via homology search
Type: Taverna 2
Preview
(Click on the image to get the full size)
Download Scalable Diagram (SVG)
Description
This workflow generates a sequence logo image for a set of amino acid sequences of FOXP2 gene, by downloading the amino acid sequences in Fasta format through Togo Web Service with UniProt identifiers (togoWS, provided by the G-language Genome Analysis Environment SOAP Service), running BLAST web service (runBLAST), retrieving a set of sequences from ID list (togoWS), aligning the sequence with MUSCLE (runMUSCLE), extracting a certain region from the alignment (extractalign, provided by Soaplab), and generating its sequence logo image (runWebLogo). See http://www.g-language.org/kbws/ for more information about Keio Bioinformatics Web Services.
This workflow generates a sequence logo image for a set of amino acid sequences of FOXP2, downloading the amino acid sequence in Fasta format through Togo Web Service with UniProt identifier, using BLAST web service (runBLAST), retrieving a set of sequence from ID list (togoWS), aligning the sequence with MUSCLE (runMUSCLE), extracting a certain region from the alignment (extractalign), and generating its sequence logo image (runWebLogo). See http://www.g-language.org/kbws/ for more information about KEIO Bioinformatics Web Service.
Download
Run
Run this Workflow in the Taverna Workbench...
Option 1:
Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/1477/download?version=2
[ More Info ]
Workflow Components
Authors (1)
Titles (3)
Descriptions (2)
Workflow Type
Log in to add Tags
Shared with Groups (0)
None
Current:
0.0 / 5
(0 ratings)
Log in to rate and see breakdown of ratings
Statistics
None
Reviews
(0)
Other workflows that use similar services
(10)
Only the first 2 workflows that use similar services are shown. View all workflows that use these services.
|
Original Uploader |
Created: 05/04/10 @ 06:13:16 | Last updated: 05/04/10 @ 06:13:17
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow shows simple sequence manipulation functions of G-language GAE, such as random shuffling, obtaining a reverse complement, and translation of nucleotide sequences, and showing basic composition statistics for nucleotide and amino acid sequences. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 23 times | Downloaded: 18 times Tags (5): |
 View
 Download (v2)
|
|
Original Uploader |
Created: 05/04/10 @ 06:22:28
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow calculates and graphs the GC skew of a given genome sequence (for the entire genome, for only the coding sequences, for only the intergenic regions, and for only the third codon positions), as well as the GC content with sliding windows. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 29 times | Downloaded: 25 times Tags (5): |
View
Download (v2)
|
Linked Data
Non-Information Resource URI: http://www.myexperiment.org/workflows/1477
Alternative Formats
Copyright © 2007 - 2011 The University of Manchester and University of Southampton
No comments yet
Log in to make a comment