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InviteWorkflow Entry: Sff2Fasta_Blat
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 Version 1
(of 1)
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Version created on:
22/09/10 @ 13:18:55
by:
Barbera van Schaik
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Revision comments 
Last edited on: 22/09/10 @ 13:35:49 by: Barbera van Schaik
Title: Sff2Fasta_Blat
Type: Taverna 1
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Description
Blat Roche 454 sequences against a reference database on the Dutch Life Science Grid
- Conversion of Roche 454 sequences to fasta
- Blat sequences against a database
http://www.bioinformaticslaboratory.nl/
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Original Uploader |
Created: 18/03/08 @ 16:40:42 | Last updated: 19/05/08 @ 15:56:35
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This is an attempt to implement the feat application from the fsl fMRI package www.fmrib.ox.ac.uk/fsl/fsl/whatsnew.html into a Scufl workflow. Details are still being polished but the general structure is here. The main problem that we have with such workflows concerns data provenance. Each of the services is typically iterated on hundreds of data sets and keeping track of the produced files is a pain.
Rating: 4.0 / 5 (2 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 231 times | Downloaded: 2 times Tags (1): |
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Original Uploader |
Created: 23/05/09 @ 17:49:08 | Last updated: 23/05/09 @ 17:52:04
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
Applications details in the following paper:
Ketan Maheshwari, Tristan Glatard, Joel Schaerer, Bertrand Delhay, Sorina Camarasu, Patrick Clarysse, Johan Montagnat. "Towards Production-level Cardiac Image Analysis with Grids" in Proceedings of the HealthGrid'09, Berlin, 28-30 june 2009
The 3 green boxes are run on the EGEE grid. Addional Beanshells have been added to transfer results from EGEE Storage Elements to a web server, to allow for better interactivity.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 47 times | Downloaded: 26 times Tags (1): |
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Non-Information Resource URI: http://www.myexperiment.org/workflows/1527
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Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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