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Items tagged with "taverna" (25)

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Packs (2)

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Pack Everything You Need To Know About myExperiment...

Created: 02/07/08 @ 22:31:12 | Last updated: 02/07/08 @ 23:11:22

... but were afraid to ask. This is the pack to go to for all information about myExperiment and the people involved in this project!

9 items in this pack

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Pack Carole's Keynotes

Created: 27/09/08 @ 19:52:17 | Last updated: 15/10/08 @ 08:55:46

Carole Goble's 2008 keynote talks that feature myExperiment, in PowerPoint 97-2003 format. All myExperiment presentation can be found on the wiki on http://wiki.myexperiment.org/index.php/Presentations  

4 items in this pack

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Groups (6)

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Network-member myGrid

Unique name: myGrid Created: Friday 30 November 2007 @ 12:19:26 (GMT)

People working or contributing to the myGrid project, including the Taverna developers

33 shared items   |   0 announcements

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Network-member Taverna 1.7.1 workflow workbench examples

Unique name: tavernaExamples Created: Wednesday 05 March 2008 @ 13:45:09 (GMT)

The workflows visible from this group correspond to the examples from the Taverna 1.7.1 workflow workbench

17 shared items   |   0 announcements

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Network-member Taverna Help

Unique name: taverna-help Created: Wednesday 07 January 2009 @ 14:54:33 (GMT)

Help and guides for using Taverna Workbench www.mygrid.org.uk/tools/taverna/taverna-2-0/download-taverna-2-0/

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Latest announcement:: Linux users

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Network-member Taverna 1 Tutorial

Unique name: taverna1tutorial Created: Wednesday 14 January 2009 @ 15:10:18 (GMT)

This group was created for anyone who is currently undergoing Taverna 1 training. Please feel free to add your workflows, packs, and files as you wish.

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Network-member Newcastle MSc.

Unique name: NewcastleMsc Created: Wednesday 04 March 2009 @ 14:53:45 (GMT)

This group was create for the Newcastle MSc.

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Network-member SADI

Unique name: sadi Created: Thursday 07 January 2010 @ 00:57:16 (GMT)

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Files (5)

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Blob Taverna tutorial

Created: 03/03/08 @ 11:15:10 | Last updated: 03/03/08 @ 11:16:11

Credits: User Franck Tanoh User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A step by step guide on how to build workflows in Taverna.  Biology oriented but  should be ok with other background with a 'tiny'  Biology knowledge.  I welcome your comments and suggestions.

File type: PowerPoint presentation

Rating: 4.0 / 5 (1 rating) | Comments: 0 | Viewed: 75 times | Downloaded: 142 times

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Blob Taverna tutorial

Created: 03/03/08 @ 11:05:26 | Last updated: 03/03/08 @ 11:20:45

Credits: User Franck Tanoh User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A step by step guide on how to build workflows in Taverna. This tutorial is designed for any background. i welcome your comments and suggestions.

File type: PowerPoint presentation

Rating: 4.0 / 5 (2 ratings) | Comments: 4 | Viewed: 123 times | Downloaded: 222 times

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Blob The Data Playground: An Intuitive Workflow Specification Environment

Created: 02/06/08 @ 14:46:40

Credits: User Katy Wolstencroft User Andrew Gibson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a copy of the paper we wrote for the 3rd International Conference on e-Science and Grid Computing 2007 (http://www.escience2007.org/index.asp). It won the Best Paper award!  

File type: Adobe PDF

Rating: 4.0 / 5 (1 rating) | Comments: 0 | Viewed: 59 times | Downloaded: 81 times

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Blob An Introduction to Taverna Tutorial

Created: 17/06/08 @ 14:17:21 | Last updated: 17/06/08 @ 14:17:20

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint presentation

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 55 times | Downloaded: 104 times

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Blob EraSysBio Summer School Taverna Tutorial

Created: 24/07/09 @ 21:54:27 | Last updated: 24/07/09 @ 21:54:28

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial is an introduction to Taverna and myExperiment

File type: application/mspowerpoint

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Workflows (12)
Taverna 1

Original Uploader

Workflow Example of a conditional execution workflow (v1)

Created: 05/03/08 @ 13:55:46 | Last updated: 25/03/08 @ 14:46:19

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 Unported License

Example_of_a_conditional_execution_workflow_7882_1
If the input is true then the string 'foo' is emited, if false then 'bar'. Just a simple example to show how the monster works, so to speak.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 784 times | Downloaded: 241 times

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Taverna 1

Original Uploader

Workflow BiomartAndEMBOSSAnalysis (v4)

Created: 05/03/08 @ 14:01:18 | Last updated: 15/09/09 @ 15:11:11

License: Creative Commons Attribution 3.0 Unported License

Biomartandembossanalysis
Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Rating: 0.0 / 5 (0 ratings) | Versions: 4 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 552 times | Downloaded: 219 times

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Taverna 1

Original Uploader

Workflow A workflow version of the EMBOSS tutorial (v1)

Created: 05/03/08 @ 14:05:21 | Last updated: 25/03/08 @ 14:43:36

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 Unported License

A_workflow_version_of_the_emboss_tutorial_32367_1
Designed to show the use of EMBOSS based Soaplab services from Taverna, this workflow has no inputs as all initial values are specified as string constants. A sequence set is fetched using the seqret tool, then simultaneously scanned for predicted transmembrane regions and subjected to a multiple alignment using emma. This alignment is then plotted to a set of PNG images and also used to build a profile using the prophecy and prophet tools.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 286 times | Downloaded: 97 times

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Taverna 1

Original Uploader

Workflow Fetch today's xkcd comic (v1)

Created: 05/03/08 @ 14:08:53 | Last updated: 07/04/08 @ 13:54:04

Credits: User Tomoinn User Stian Soiland-Reyes

Attributions:

License: Creative Commons Attribution 3.0 Unported License

Fetch_today_s_xkcd_comic_5577_1
Use the local java plugins and some filtering operations to fetch the comic strip image from http://xkcd.com/ Based on the FetchDailyDilbert workflow.

Rating: 4.5 / 5 (2 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 291 times | Downloaded: 119 times

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Taverna 1

Original Uploader

Workflow Fetch Dragon images from BioMoby (v2)

Created: 05/03/08 @ 14:09:37 | Last updated: 25/03/08 @ 14:42:00

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 Unported License

Fetch_dragon_images_from_biomoby_1077_2
Fetch images and annotations of snapdragons

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 207 times | Downloaded: 68 times

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Taverna 1

Original Uploader

Workflow Demonstration of configurable iteration (v1)

Created: 05/03/08 @ 14:10:52 | Last updated: 25/03/08 @ 14:40:49

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 Unported License

Demonstration_of_configurable_iteration_12320_1
This workflow shows the use of the iteration strategy editor to ensure that only relevant combinations of inputs are used during an implicit iteration.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 193 times | Downloaded: 118 times

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Taverna 1

Original Uploader

Workflow Retrieve sequence in EMBL format (v3)

Created: 05/03/08 @ 14:11:19 | Last updated: 17/06/09 @ 16:51:32

Credits: User Franck Tanoh User Tomoinn User Stuart Owen

License: Creative Commons Attribution 3.0 Unported License

Retrieve_sequence_in_embl_format
This workflow retrieves a sequence associated with its features in embl format

Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 235 times | Downloaded: 72 times

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Taverna 1

Original Uploader

Workflow Fetch PDB flatfile from RCSB server (v1)

Created: 05/03/08 @ 14:13:25 | Last updated: 31/03/08 @ 16:01:42

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 Unported License

Fetch_pdb_flatfile_from_rcsb_server_27474_1
Given an identifier such as '1crn' fetches the PDB format flatfile and returns the corresponding 3D image of the protein.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 206 times | Downloaded: 73 times

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Taverna 1

Original Uploader

Workflow GBSeq test (v2)

Created: 05/03/08 @ 14:15:36 | Last updated: 31/03/08 @ 15:55:10

Credits: User Franck Tanoh

License: Creative Commons Attribution 3.0 Unported License

Gbseq_test_23328_2
This workflow retrieves nucleotide and protein sequences with the literature and references associated to them given a protein and a nucleotide id.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 173 times | Downloaded: 64 times

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Taverna 1

Original Uploader

Workflow Staged iteration strategy (v1)

Created: 07/05/08 @ 12:10:27 | Last updated: 07/05/08 @ 12:32:37

Credits: User Stian Soiland-Reyes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Staged_iteration_strategy_11879_1
Consider two lists A and B, of equal size 3. A[1] corresponds to B[1], A[2] to B[2], etc, for instance A are image scans from 2007 and B from 2008, and the index indicates the patient number. A = [a0, a1, a2] B = [b0, b1, b2] There's then two lists of possible parameters P and Q, of different lengths, P has 2 and Q has 4 items. P = [p0, p1] Q = [q0, q1, q2, q3] Each of the A items should be processed in ap using each of the P parameters, and each of the B items ...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 54 times | Downloaded: 30 times

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Taverna 1

Original Uploader

Workflow Analysing workflows (v3)

Created: 13/02/09 @ 09:12:58 | Last updated: 06/05/09 @ 08:50:31

Credits: User Wassinki User Pieter Neerincx User Katy Wolstencroft User Marco Roos

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Analysing_workflows
This workflows analyses workflows stored at the myExperiment site. It is used in the paper submitted to the Workshop on Scientific Workflow 2009. The workflow shows the task usage in the Taverna workflows stored at the myExperiment site The amount of services used The amount of local processors used The amount of scripting tasks The amount of sub workflows Furthermore it classifies the local services based on their intended function. The workflow has two inputs: ...

Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 109 times | Downloaded: 32 times

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Taverna 2

Original Uploader

Workflow Example 3 (v1)

Created: 20/10/09 @ 17:01:00

Credits: User Ruben

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Example_3
Search in the Datenbank SWISS the Sequence 1220173

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 60 times | Downloaded: 17 times

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