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KEGG pathways common to both QTL and microarray based investigations

Workflow Entry: KEGG pathways common to both QTL and microarray based investigations

Created at: 15/11/10 @ 12:30:21 Last updated: 15/11/10 @ 12:30:59

Version 1 (of 1)

Version created on: 15/11/10 @ 12:30:21 by: Paul Fisher | Revision comments Expand

Last edited on: 15/11/10 @ 12:30:59 by: Paul Fisher

Title: KEGG pathways common to both QTL and microarray based investigations

Type: Taverna 2

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Description

This workflow takes in two lists of KEGG pathway ids. These are designed to come from pathways found from genes in a QTL (Quantitative Trait Loci) region, and from pathways found from genes differentially expressed in a microarray study. By identifying the intersecting pathways from both studies, a more informative picture is obtained of the candidate processes involved in the expression of a phenotype

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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Inputs (2)

Name	Description
qtl_pathways
microarray_pathways

Processors (6)

Name	Type	Description
regex	stringconstant
common_pathways	soaplab
remove_null_values	beanshell
kegg_pathways	wsdl	See the Service entry for this web service.
merge_pathway_desc	localworker
split_pathway_ids	localworker

Beanshells (1)

Name	Description	Inputs	Outputs
remove_null_values		input	output

Outputs (1)

Name	Description
intersecting_pathways

Datalinks (8)

Source	Sink
qtl_pathways	common_pathways:qtl_pathways_direct_data
microarray_pathways	common_pathways:microarray_pathways_direct_data
merge_pathway_desc:concatenated	remove_null_values:input
split_pathway_ids:split	kegg_pathways:string
kegg_pathways:return	merge_pathway_desc:stringlist
common_pathways:output	split_pathway_ids:string
regex:value	split_pathway_ids:regex
remove_null_values:output	intersecting_pathways

Coordinations (0)

Information Workflow Type

Taverna 2

Information Original Uploader

Paul Fisher

Information License

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Paul Fisher

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Information Tags (21)

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Information Shared with Groups (1)

PhD Supplementary Information

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Information Attributed By (2)

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Trichuriasis Induced Colitis
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Information Statistics

115 viewings

322 downloads

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Citations (0)

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Version History

Earliest Version:
[1] - KEGG pathways common to both QTL and microarray based investigations

Created on: Monday 15 November 2010 @ 12:30:21 (GMT)

Created by: Paul Fisher

Last edited on: Monday 15 November 2010 @ 12:30:59 (GMT)

Last edited by: Paul Fisher

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