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InviteWorkflow Entry: NCBI BLAST (SOAP)
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Version created on:
29/11/10 @ 20:03:13
by:
Hamish McWilliam
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Title: NCBI BLAST (SOAP)
Type: Taverna 2
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Description
Perform a BLAST search using the EMBL-EBI’s NCBI BLAST (SOAP) service (see http://www.ebi.ac.uk/Tools/webservices/services/sss/ncbi_blast_soap). The query sequence, database to search and BLAST program to use are inputs, the other parameters for the search are allowed to default.
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Original Uploader |
Created: 17/01/11 @ 12:51:58 | Last updated: 17/01/11 @ 12:52:03
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow performs an NCBI blast at the EBI. It uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 75 times | Downloaded: 34 times Tags (13): |
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Original Uploader |
Created: 08/06/11 @ 15:24:57 | Last updated: 08/06/11 @ 15:37:27
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow accepts an url of a fasta file as input and performs an NCBI blastn at the EBI against the bacteria database and an NCBI blastx against the uniref90 database.
From the blast results of the blastx the hit with the lowest e-value is taken and the GO is returned.
Output is blastx and blastn results and GO from the first hit of the blastx.
Based on Katy Wolstencroft & Hamish McWilliam EBI_NCBI_BLAST http://www.myexperiment.org/workflows/1765.html
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 23 times | Downloaded: 8 times Tags (1): |
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Non-Information Resource URI: http://www.myexperiment.org/workflows/1688
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