Workflow Entry: InterProScan (SOAP)

Created at: 03/12/10 @ 07:41:47 Last updated: 28/03/13 @ 12:45:59

Version 1 (of 1)

Version created on: 03/12/10 @ 07:41:47 by: Hamish McWilliam

Title: InterProScan (SOAP)

Type: Taverna 2

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Description

Perform an InterProScan search using the EMBL-EBIâ€™s InterProScan (SOAP) service (see http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_soap). The query sequence to use is the input, the other parameters for the search are allowed to default.

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http://www.myexperiment.org/workflows/1696/download?version=1
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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Dependencies (0)

Inputs (2)

Name	Description
Email	Valid e-mail address for submission.
Sequence	Query protein sequence to be processed by InterProScan. Can be either sequence in any common format (fasta recommended) or an entry identifier in DB:ID format.

Processors (13)

Name	Type	Description
run	wsdl	See the Service entry for this web service.
run_input	xmlsplitter
run_output	xmlsplitter
run_input_2	xmlsplitter
getResult	wsdl	See the Service entry for this web service.
getResult_input	xmlsplitter
getResult_output	xmlsplitter
type_value	stringconstant
Job_status	workflow
getResult_2	wsdl	See the Service entry for this web service.
getResult_2_input	xmlsplitter
getResult_2_output	xmlsplitter
type_value_1	stringconstant

Beanshells (0)

Outputs (4)

Name	Description
JobId	Identifier for the job.
Job_status	Status of the job. Indicates if the job completed successfully or failed.
Tab_result	Plain text, tab-delimited output.
XML_result	XML format output.

Datalinks (18)

Source	Sink
run_input:output	run:parameters
Email	run_input:email
run_input_2:output	run_input:parameters
run:parameters	run_output:input
Sequence	run_input_2:sequence
getResult_input:output	getResult:parameters
type_value:value	getResult_input:type
run_output:jobId	getResult_input:jobId
getResult:parameters	getResult_output:input
run_output:jobId	Job_status:JobId
getResult_2_input:output	getResult_2:parameters
run_output:jobId	getResult_2_input:jobId
type_value_1:value	getResult_2_input:type
getResult_2:parameters	getResult_2_output:input
run_output:jobId	JobId
Job_status:Status	Job_status
getResult_output:output	Tab_result
getResult_2_output:output	XML_result