About | Mailing List | Publications

Give us Feedback |

Invite

Home
»
Workflows
»
InterProScan (SOAP)

Workflow Entry: InterProScan (SOAP)

Created at: 03/12/10 @ 07:41:47 Last updated: 03/12/10 @ 07:41:48

Version 1 (of 1)

Version created on: 03/12/10 @ 07:41:47 by: Hamish McWilliam | Revision comments Expand

Title: InterProScan (SOAP)

Type: Taverna 2

Preview

(Click on the image to get the full size)

Download Scalable Diagram (SVG)

Description

Perform an InterProScan search using the EMBL-EBI’s InterProScan (SOAP) service (see http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_soap). The query sequence to use is the input, the other parameters for the search are allowed to default.

Download

Download Workflow File/Package (T2FLOW)

Download Workflow as a Galaxy tool

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/1696/download?version=1
[ More Info Expand ]

Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Inputs (2)

Name	Description
Email	Valid e-mail address for submission.
Sequence	Query protein sequence to be processed by InterProScan. Can be either sequence in any common format (fasta recommended) or an entry identifier in DB:ID format.

Processors (13)

Name	Type	Description
run	wsdl	See the Service entry for this web service.
run_input	xmlsplitter
run_output	xmlsplitter
run_input_2	xmlsplitter
getResult	wsdl	See the Service entry for this web service.
getResult_input	xmlsplitter
getResult_output	xmlsplitter
type_value	stringconstant
Job_status	workflow
getResult_2	wsdl	See the Service entry for this web service.
getResult_2_input	xmlsplitter
getResult_2_output	xmlsplitter
type_value_1	stringconstant

Beanshells (0)

Outputs (4)

Name	Description
JobId	Identifier for the job.
Job_status	Status of the job. Indicates if the job completed successfully or failed.
Tab_result	Plain text, tab-delimited output.
XML_result	XML format output.

Datalinks (18)

Source	Sink
run_input:output	run:parameters
Email	run_input:email
run_input_2:output	run_input:parameters
run:parameters	run_output:input
Sequence	run_input_2:sequence
getResult_input:output	getResult:parameters
type_value:value	getResult_input:type
run_output:jobId	getResult_input:jobId
getResult:parameters	getResult_output:input
run_output:jobId	Job_status:JobId
getResult_2_input:output	getResult_2:parameters
run_output:jobId	getResult_2_input:jobId
type_value_1:value	getResult_2_input:type
getResult_2:parameters	getResult_2_output:input
run_output:jobId	JobId
Job_status:Status	Job_status
getResult_output:output	Tab_result
getResult_2_output:output	XML_result

Coordinations (2)

Controller	Target
Job_status	getResult
Job_status	getResult_2

Information Workflow Type

Taverna 2

Information Original Uploader

Hamish McWilliam

Information License

All versions of this Workflow are licensed under:

Information Credits (0)

(People/Groups)

None

Information Attributions (1)

(Workflows/Files)

EBI_InterProScan

Information Tags (11)

Original Uploader tags

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Ratings (0)

Current:

0.0 / 5

(0 ratings)

Log in to rate and see breakdown of ratings

Information Attributed By (1)

(Workflows/Files)

InterProScan (SOAP)

Information Favourited By (0)

No one

Information Statistics

134 viewings

336 downloads

[ see breakdown ]

Citations (0)

None

Version History

Earliest Version:
[1] - InterProScan (SOAP)

Created on: Friday 03 December 2010 @ 07:41:47 (GMT)

Created by: Hamish McWilliam

Revision comments:

None

This Workflow only has one version.

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (7)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 2

Original Uploader

Matthieu

Drug Repurposing Targets (v1)

Created: 01/04/11 @ 09:33:13 | Last updated: 01/04/11 @ 09:34:14

Credits: Matthieu Alexncl Kristiangardner123 Paulshreeve Matt Collison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 23 times | Downloaded: 8 times

This Workflow has no tags!

View

Download (v1)

Taverna 2

Original Uploader

Alan Williams

EBI_InterproScan_NewServices (v1)

Created: 05/04/12 @ 16:41:00 | Last updated: 05/04/12 @ 16:41:01

Credits: Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text, xml or png. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 0 times | Downloaded: 2 times

This Workflow has no tags!

View

Download (v1)

What is this?

Linked Data

Non-Information Resource URI: http://www.myexperiment.org/workflows/1696

Alternative Formats