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EMBL-EBI ClustalW2 (SOAP)

Workflow Entry: EMBL-EBI ClustalW2 (SOAP)

Created at: 06/12/10 @ 13:16:52

Version 1 (of 1)

Version created on: 06/12/10 @ 13:16:52 by: Hamish McWilliam | Revision comments Expand

Title: EMBL-EBI ClustalW2 (SOAP)

Type: Taverna 2

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Description

Perform a ClustalW2 alignment using the EMBL-EBI’s ClustalW2 (SOAP) service (see http://www.ebi.ac.uk/Tools/webservices/services/msa/clustalw2_soap).

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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Inputs (2)

Name	Description
Email_address	Valid e-amil address for job submssion to service.
Sequences	Set of sequences to align. These can be in any common sequence format, although fasta format is recommended, and should be input as a single value (i.e. not a list).

Processors (17)

Name	Type	Description
run	wsdl	See the Service entry for this web service.
run_input	xmlsplitter
run_output	xmlsplitter
run_input_2	xmlsplitter
getResult	wsdl	See the Service entry for this web service.
getResult_input	xmlsplitter
getResult_output	xmlsplitter
type_value	stringconstant
getResult_2	wsdl	See the Service entry for this web service.
getResult_2_input	xmlsplitter
getResult_2_output	xmlsplitter
type_value_1	stringconstant
getResult_3	wsdl	See the Service entry for this web service.
getResult_3_input	xmlsplitter
getResult_3_output	xmlsplitter
type_value_2	stringconstant
Job_status_poll	workflow

Beanshells (0)

Outputs (5)

Name	Description
ClustalW_alignment	The sequence alignment. In Clustal format.
ClustalW_guide_tree	Guide tree generated during the alignment. Please note this is not a phylogentic tree and does not reflect the final alignment obtained.
ClustalW_output	Progress output from ClustalW. Useful when diagnosing problems.
Job_ID	Job identifier.
Job_status	Job status.

Datalinks (23)

Source	Sink
run_input:output	run:parameters
Email_address	run_input:email
run_input_2:output	run_input:parameters
run:parameters	run_output:input
Sequences	run_input_2:sequence
getResult_input:output	getResult:parameters
run_output:jobId	getResult_input:jobId
type_value:value	getResult_input:type
getResult:parameters	getResult_output:input
getResult_2_input:output	getResult_2:parameters
run_output:jobId	getResult_2_input:jobId
type_value_1:value	getResult_2_input:type
getResult_2:parameters	getResult_2_output:input
getResult_3_input:output	getResult_3:parameters
run_output:jobId	getResult_3_input:jobId
type_value_2:value	getResult_3_input:type
getResult_3:parameters	getResult_3_output:input
run_output:jobId	Job_status_poll:JobId
getResult_3_output:output	ClustalW_alignment
getResult_2_output:output	ClustalW_guide_tree
getResult_output:output	ClustalW_output
run_output:jobId	Job_ID
Job_status_poll:Job_status	Job_status

Coordinations (3)

Controller	Target
Job_status_poll	getResult_3
Job_status_poll	getResult
Job_status_poll	getResult_2

Information Workflow Type

Taverna 2

Information Original Uploader

Hamish McWilliam

Information License

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Information Credits (0)

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Information Attributions (1)

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EBI_ClustalW2

Information Tags (7)

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Information Attributed By (2)

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Information Statistics

165 viewings

316 downloads

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Citations (0)

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Version History

Earliest Version:
[1] - EMBL-EBI ClustalW2 (SOAP)

Created on: Monday 06 December 2010 @ 13:16:52 (GMT)

Created by: Hamish McWilliam

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Taverna 2

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Katy Wolstencroft

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Created: 17/01/11 @ 16:48:40 | Last updated: 17/01/11 @ 16:48:37

Credits: Katy Wolstencroft Hamish McWilliam

Attributions: EMBL-EBI ClustalW2 (SOAP) EBI_ClustalW2

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Taverna 2

Original Uploader

Achille Zappa

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Created: 18/04/11 @ 10:54:14 | Last updated: 18/04/11 @ 10:54:17

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Attributions: EMBL-EBI ClustalW2 (SOAP)

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow performs a generic protein sequence analysis. A multiple sequence alignment and finally a phylogenetic analysis.This workflow performs a generic protein sequence analysis. In order to do that a novel protein sequence enters into the software along with a list of known protein identifiers chosen by the biologist to perform a homology search, followed by a multiple sequence alignment and finally a phylogenetic analysis.This workflow performs "parallel" generic protein sequence ana...

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Linked Data

Non-Information Resource URI: http://www.myexperiment.org/workflows/1705

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