Workflow Entry: EMBL-EBI ClustalW2 (SOAP)

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M_Super_aln_boot_phylo_New (1)

Created: 18/04/11 @ 10:54:14 | Last updated: 18/04/11 @ 10:54:17

Credits: Achille Zappa

Attributions: EMBL-EBI ClustalW2 (SOAP)

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow performs a generic protein sequence analysis. A multiple sequence alignment and finally a phylogenetic analysis.This workflow performs a generic protein sequence analysis. In order to do that a novel protein sequence enters into the software along with a list of known protein identifiers chosen by the biologist to perform a homology search, followed by a multiple sequence alignment and finally a phylogenetic analysis.This workflow performs "parallel" generic protein sequence ana...

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EMBL-EBI ClustalW2_SOAP (2)

Created: 17/01/11 @ 16:48:40 | Last updated: 30/01/13 @ 12:57:29

Credits: Katy Wolstencroft Hamish McWilliam

Attributions: EMBL-EBI ClustalW2 (SOAP) EBI_ClustalW2

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Perform a ClustalW2 alignment of protein sequences using the EMBL-EBI’s ClustalW2 (SOAP) service (see http://www.ebi.ac.uk/Tools/webservices/services/msa/clustalw2_soap). This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration.

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