Workflow Entry: EBI_ClustalW2

Created at: 31/05/08 @ 10:27:59 Last updated: 02/06/08 @ 21:27:39

Version 1 (of 1)

Version created on: 31/05/08 @ 10:27:58 by: Hamish McWilliam | Revision comments Expand

Last edited on: 02/06/08 @ 21:27:39 by: Hamish McWilliam

Title: EBI_ClustalW2

Type: Taverna 1

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Description

Perform a ClustalW multiple sequence alignment using the EBI’s WSClustalW2 service (see http://www.ebi.ac.uk/Tools/webservices/services/clustalw2). The set of sequences to align are the input, the other parameters for the search (see Job_params) are allowed to default.

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http://www.myexperiment.org/workflows/203/download?version=1
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Workflow Components

Inputs (2)

Name	Description
Sequences	Sequences to align (fasta format recommended).
Email_address	User e-mail address.

Processors (11)

Name	Type	Description
runClustalW2	arbitrarywsdl	Submit a ClustalW analysis job (see http://www.ebi.ac.uk/Tools/webservices/services/clustalw2#runclustalw2_params_content)
Job_params	local
Content_list	local
Input_data	local
Get_alignment_result	arbitrarywsdl	Get the results of a job (see http://www.ebi.ac.uk/Tools/webservices/services/clustalw2#poll_jobid_type)
Get_guide_tree_result	arbitrarywsdl	Get the results of a job (see http://www.ebi.ac.uk/Tools/webservices/services/clustalw2#poll_jobid_type)
Unpack_alignment_result	local
Unpack_guide_tree_result	local
EBI_ClustalW2_poll_job	workflow	Check for job status, and wait if job not finished.
Get_output_result	arbitrarywsdl	Get the results of a job (see http://www.ebi.ac.uk/Tools/webservices/services/clustalw2#poll_jobid_type)
Unpack_output_result	local

Outputs (4)

Name	Description
ClustalW_alignment	The alignment in ClustalW format.
ClustalW_guide_tree	Guide tree used to produce the final alignment.
Job_ID	EBI job identifier
ClustalW_output

Links (16)

Sink	Source
Job_params:email	Email_address
runClustalW2:content	Content_list:output
Unpack_alignment_result:bytes	Get_alignment_result:output
Unpack_guide_tree_result:bytes	Get_guide_tree_result:output
Unpack_output_result:bytes	Get_output_result:output
Content_list:WSArrayofData	Input_data:output
runClustalW2:params	Job_params:output
Input_data:content	Sequences
ClustalW_alignment	Unpack_alignment_result:string
ClustalW_guide_tree	Unpack_guide_tree_result:string
ClustalW_output	Unpack_output_result:string
EBI_ClustalW2_poll_job:Job_ID	runClustalW2:jobid
Get_alignment_result:jobid	runClustalW2:jobid
Get_guide_tree_result:jobid	runClustalW2:jobid
Get_output_result:jobid	runClustalW2:jobid
Job_ID	runClustalW2:jobid