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InviteWorkflow Entry: Mouse Microarray Analysis
| Citations (1) | Version History | Reviews (0) | Comments (1) |
 Version 3 (latest)
(of 3)
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Version created on:
03/10/07 @ 18:36:05
by:
Paul Fisher
|
Revision comments 
Last edited on: 03/12/09 @ 16:20:34 by: Paul Fisher
Title: Mouse Microarray Analysis
Type: Taverna 1
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Description
This workflow takes in probesets from and AffyMetrix micorarray experiment and returns: the genes ; gene start and end positions; chromosome where genes reside; ensembl trasncripts; SwissProt ids; affy probeset identifiers for chips Mouse430_2 and Mouse430a_2.
Example ids from the Mouse430_2 affymetrix array are as follows (newline separated):
1447227_at
1440624_at
1436240_at
1454904_at
1435665_at
1418148_at
1429831_at
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Run this Workflow in the Taverna Workbench...
Option 1:
Launch in TavernaNote: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.
Option 2:
Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/19/download?version=3
[ More Info ]
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Statistics
1. Fisher P, Hedeler C, Wolstencroft K, Hulme H, Noyes H, Kemp S, Stevens R, Brass A, A systematic strategy for large-scale analysis of genotype phenotype correlations: identification of candidate genes involved in African trypanosomiasis., Nucleic Acids Research, 20 August 2007, http://nar.oxfordjournals.org/cgi/content/full/35/16/5625
Earliest Version:
[1] - Pathways from Diff Expressed Genes
Previous Versions:
[2] - MOUSE Pathways from Diff Expressed Genes
Latest Version:
[3] - Mouse Microarray Analysis
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Original Uploader |
Created: 03/10/07 @ 18:36:00 | Last updated: 03/12/09 @ 16:16:31 License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in the cow, Bos taurus. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. As the Cow genome is currently unfinished, the workflow subsequently maps the cow ensembl gene ids to human orthologues. Entrez and UniProt identifiers are then identified...
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 1 | Citations: 0 Viewed: 102 times | Downloaded: 48 times Tags (1): |
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Original Uploader |
Created: 12/07/08 @ 09:15:13 | Last updated: 12/07/08 @ 20:20:52
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
No description
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 73 times | Downloaded: 37 times Tags (1): |
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Linked Data
Non-Information Resource URI: http://www.myexperiment.org/workflows/19
Alternative Formats
Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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Do you have some example inputs for running this workflow..?