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InviteWorkflow Entry: EBI WU-BLAST with program and database selection prompts.
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 Version 3 (latest)
(of 3)
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Version created on:
04/07/09 @ 11:39:54
by:
Hamish McWilliam
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Revision comments 
Last edited on: 06/12/10 @ 10:56:44 by: Hamish McWilliam
Title: EBI WU-BLAST with program and database selection prompts.
Type: Taverna 1
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Description
Run a BLAST analysis using the EBI's WSWUBlast service (see http://www.ebi.ac.uk/Tools/webservices/services/wublast). This workflow wraps the EBI_WU-BLAST workflow to provide a basic user interface which prompts for the required inputs: sequence, database, BLAST program and user e-mail. Other parameters (e.g. matrix, sort, gap penalties, etc.) are allowed to default. The values presented in the selection menus for the program and database are obtained from the service, using the provided meta-data operations: getPrograms and getDatabases.
Note: the WSWUBlast service used by this workflow is deprecated as of 21st September 2010 and should not be used in any new development. This service is will be retired during 2011. EBI's replacement WU-BLAST services (REST or SOAP) should be used instead.
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Earliest Version:
[1] - EBI WU-BLAST with prompt
Previous Versions:
[2] - EBI WU-BLAST with prompt
Latest Version:
[3] - EBI WU-BLAST with program and database selection prompts.
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Original Uploader |
Created: 07/04/09 @ 20:13:19
Credits:
Attributions:
License: Creative Commons Attribution 3.0 Unported License
An implmentation of the classical sequence analysis workflow:
Find homologues (sequence similarity search)
Fetch homologues
Align homologues (multiple sequence alignment)
Produce phylogenetic tree
In this implementation the EBI webservices are used:
WU-BLAST (WSWUBlast) blastp vs. UniProtKB
dbfetch (WSDbfetch)
ClustalW (WSClustalW2)
ClustalW (WSClustalW2)
Note: this version does not add the inital query sequence to the alignment, and so is most useful when used with the identifers...
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 419 times | Downloaded: 140 times Tags (15): |
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Original Uploader |
Created: 20/03/09 @ 15:20:36 | Last updated: 20/03/09 @ 15:22:25
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
No description
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 169 times | Downloaded: 46 times Tags (6): |
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Non-Information Resource URI: http://www.myexperiment.org/workflows/198
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Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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