Workflow Entry: EBI_ClustalW2

Created at: 07/04/09 @ 20:06:03      Last updated: 06/12/10 @ 11:00:19
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Version created on: 07/04/09 @ 20:06:03 by: Hamish McWilliam   |   Revision comment Expand

Last edited on: 06/12/10 @ 11:00:19 by: Hamish McWilliam

Title: EBI_ClustalW2

Type: Taverna 1


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Information Description

Perform a ClustalW multiple sequence alignment using the EBI’s WSClustalW2 service (see http://www.ebi.ac.uk/Tools/webservices/services/clustalw2). The set of sequences to align are the input, the other parameters for the search (see Job_params) are allowed to default.

Note: the WSClustalW2 service used by this workflow is deprecated as of 21st September 2010 and should not be used in any new development. This service is will be retired during 2011. EBI's replacement ClustalW2 services (REST or SOAP) should be used instead.

 


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Information Workflow Components

Inputs (2)
Processors (11)
Beanshells (1)
Outputs (4)
Links (16)
Coordinations (3)

Information Workflow Type

Taverna 1

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Workflow Other workflows that use similar services (7)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.


Original Uploader

Workflow EBI_ClustalW2_phylogentic_tree (2)

Created: 07/04/09 @ 20:09:32

Credits: User Hamish McWilliam

License: Creative Commons Attribution 3.0 Unported License

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Create a Neighbor-joining phylogenetic tree, with Kimura distance corrections, from a sequence alignment using the EBI's WSClustalW2 service (see http://www.ebi.ac.uk/Tools/webservices/services/clustalw2).

Rating: 4.0 / 5 (1 rating) | Versions: 2 | Reviews: 1 | Comments: 1 | Citations: 0

Viewed: 411 times | Downloaded: 127 times

Tags (7):

Original Uploader

Workflow EBI_ClustalW_alignment_tree (2)

Created: 31/05/08 @ 13:53:04 | Last updated: 03/12/10 @ 13:34:43

Credits: User Hamish McWilliam

Attributions: Workflow EBI_ClustalW2 Workflow EBI_ClustalW2_phylogentic_tree

License: Creative Commons Attribution 3.0 Unported License

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Given a set of sequences perform an multiple sequence alignment and from the multiple alignment derive a phylogenetic tree. The popular ClustalW program (see http://www.clustal.org/), as implemented in the EBI's WSClustalW2 service (see http://www.ebi.ac.uk/Tools/webservices/services/clustalw2) is used to perform both tasks.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 221 times | Downloaded: 102 times

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Non-Information Resource URI: http://www.myexperiment.org/workflows/203


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