Workflow Entry: EBI_ClustalW2

Created at: 07/04/09 @ 20:06:03      Last updated: 06/12/10 @ 11:00:19
Information Version 2 (latest) (of 2)
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Version created on: 07/04/09 @ 20:06:03 by: Hamish McWilliam   |   Revision comments Expand

Last edited on: 06/12/10 @ 11:00:19 by: Hamish McWilliam

Title: EBI_ClustalW2

Type: Taverna 1


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Information Description

Perform a ClustalW multiple sequence alignment using the EBI’s WSClustalW2 service (see http://www.ebi.ac.uk/Tools/webservices/services/clustalw2). The set of sequences to align are the input, the other parameters for the search (see Job_params) are allowed to default.

Note: the WSClustalW2 service used by this workflow is deprecated as of 21st September 2010 and should not be used in any new development. This service is will be retired during 2011. EBI's replacement ClustalW2 services (REST or SOAP) should be used instead.

 


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Information Workflow Components

Inputs (2)
Processors (11)
Beanshells (1)
Outputs (4)
Links (16)
Coordinations (3)

Information Workflow Type

Taverna 1

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Version History

Earliest Version:
[1] - EBI_ClustalW2

Created on: Saturday 31 May 2008 @ 10:27:58 (GMT)

Created by: Hamish McWilliam

Last edited on: Monday 02 June 2008 @ 21:27:39 (GMT)

Last edited by: Hamish McWilliam

Revision comments:

None

Latest Version:
[2] - EBI_ClustalW2

Created on: Tuesday 07 April 2009 @ 20:06:03 (GMT)

Created by: Hamish McWilliam

Last edited on: Monday 06 December 2010 @ 11:00:19 (GMT)

Last edited by: Hamish McWilliam

Revision comments:

Update for changes in nomenclature used in web service.

 



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Workflow Other workflows that use similar services (7)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.


Original Uploader

Workflow Protein_search_fetch_align_tree (v2)

Created: 07/04/09 @ 20:13:19

Credits: User Hamish McWilliam

Attributions: Workflow EBI_ClustalW2 Workflow EBI_ClustalW2_phylogentic_tree Workflow EBI_dbfetch_fetchBatch Workflow EBI_WU-BLAST

License: Creative Commons Attribution 3.0 Unported License

Thumb

An implmentation of the classical sequence analysis workflow: Find homologues (sequence similarity search) Fetch homologues Align homologues (multiple sequence alignment) Produce phylogenetic tree In this implementation the EBI webservices are used: WU-BLAST (WSWUBlast) blastp vs. UniProtKB dbfetch (WSDbfetch) ClustalW (WSClustalW2) ClustalW (WSClustalW2) Note: this version does not add the inital query sequence to the alignment, and so is most useful when used with the identifers...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 403 times | Downloaded: 133 times

Tags (15):

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Original Uploader

Workflow Workflow for Automated Comparative Protein Sequences Analysis (v2)

Created: 29/06/10 @ 12:59:57 | Last updated: 31/08/10 @ 09:43:41

Credits: User Achille Zappa

Attributions: Workflow EBI_ClustalW_alignment_tree

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

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This workflow performs "parallel" generic protein sequence analysis. In order to do that a list of known protein identifiers chosen by the biologist enters into the software to perform different multiple sequence alignments and finally phylogenetic analysis.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 44 times | Downloaded: 10 times

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Non-Information Resource URI: http://www.myexperiment.org/workflows/203


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