Log in
Register
Give us Feedback
InviteWorkflow Entry: EBI_ClustalW_alignment_tree
| Citations (0) | Version History | Reviews (0) | Comments (0) |
 Version 2 (latest)
(of 2)
|
Version created on:
03/12/10 @ 13:34:41
by:
Hamish McWilliam
|
Revision comments 
Title: EBI_ClustalW_alignment_tree
Type: Taverna 1
Preview
(Click on the image to get the full size)
Download Scalable Diagram (SVG)
Description
Given a set of sequences perform an multiple sequence alignment and from the multiple alignment derive a phylogenetic tree. The popular ClustalW program (see http://www.clustal.org/), as implemented in the EBI's WSClustalW2 service (see http://www.ebi.ac.uk/Tools/webservices/services/clustalw2) is used to perform both tasks.
Download
Run
Run this Workflow in the Taverna Workbench...
Option 1:
Launch in TavernaNote: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.
Option 2:
Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/207/download?version=2
[ More Info ]
Workflow Components
Workflow Type
Log in to add Tags
Shared with Groups (0)
None
Current:
0.0 / 5
(0 ratings)
Log in to rate and see breakdown of ratings
Statistics
None
Earliest Version:
[1] - EBI_ClustalW_alignment_tree
Latest Version:
[2] - EBI_ClustalW_alignment_tree
Reviews
(0)
Other workflows that use similar services
(7)
Only the first 2 workflows that use similar services are shown. View all workflows that use these services.
|
Original Uploader |
Created: 07/04/09 @ 20:06:03 | Last updated: 06/12/10 @ 11:00:19
Credits:
License: Creative Commons Attribution 3.0 Unported License
Perform a ClustalW multiple sequence alignment using the EBI’s WSClustalW2 service (see http://www.ebi.ac.uk/Tools/webservices/services/clustalw2). The set of sequences to align are the input, the other parameters for the search (see Job_params) are allowed to default.
Note: the WSClustalW2 service used by this workflow is deprecated as of 21st September 2010 and should not be used in any new development. This service is will be retired during 2011. EBI's replacement ClustalW2 servi...
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 479 times | Downloaded: 229 times Tags (7): |
 View
 Download (v2)
|
|
Original Uploader |
Created: 07/04/09 @ 20:13:19
Credits:
Attributions:
License: Creative Commons Attribution 3.0 Unported License
An implmentation of the classical sequence analysis workflow:
Find homologues (sequence similarity search)
Fetch homologues
Align homologues (multiple sequence alignment)
Produce phylogenetic tree
In this implementation the EBI webservices are used:
WU-BLAST (WSWUBlast) blastp vs. UniProtKB
dbfetch (WSDbfetch)
ClustalW (WSClustalW2)
ClustalW (WSClustalW2)
Note: this version does not add the inital query sequence to the alignment, and so is most useful when used with the identifers...
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 403 times | Downloaded: 133 times Tags (15): |
View
Download (v2)
|
Linked Data
Non-Information Resource URI: http://www.myexperiment.org/workflows/207
Alternative Formats
Copyright © 2007 - 2011 The University of Manchester and University of Southampton
No comments yet
Log in to make a comment