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InviteWorkflow Entry: EBI NCBI BLAST Multi FASTA
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 Version 2 (latest)
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Version created on:
16/07/11 @ 19:35:10
by:
Rafael C. Jimenez
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Title: EBI NCBI BLAST Multi FASTA
Type: Taverna 2
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Description
This workflow performs multiple sequence similarity searches using the NCBI blast at the EBI. It uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration.
If you want to make a blast search for more than 10 sequences I would recommend you to run the workflow using the command line. For instance: executeworkflow.bat -embedded -inputvalue email your@email.com -inputfile yourfile.txt EBI_NCBI_BLAST-multifasta.t2flow
More docuemtnation about how to use the command line tool in http://www.taverna.org.uk/documentation/taverna-2-x/command-line-tool/2-3/
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Earliest Version:
[1] - EBI NCBI BLAST Multi FASTA
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[2] - EBI NCBI BLAST Multi FASTA
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Original Uploader |
Created: 17/01/11 @ 12:51:58 | Last updated: 17/01/11 @ 12:52:03
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Attributions:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow performs an NCBI blast at the EBI. It uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 75 times | Downloaded: 34 times Tags (13): |
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Original Uploader |
Created: 29/11/10 @ 20:03:13 | Last updated: 29/11/10 @ 20:03:14
Attributions:
License: Creative Commons Attribution 3.0 Unported License
Perform a BLAST search using the EMBL-EBI’s NCBI BLAST (SOAP) service (see http://www.ebi.ac.uk/Tools/webservices/services/sss/ncbi_blast_soap). The query sequence, database to search and BLAST program to use are inputs, the other parameters for the search are allowed to default.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 44 times | Downloaded: 61 times Tags (7): |
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Non-Information Resource URI: http://www.myexperiment.org/workflows/2258
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