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InviteWorkflow Entry: Nucleotide_ORF_translation
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 Version 1
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Version created on:
06/06/08 @ 20:13:04
by:
Hamish McWilliam
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Title: Nucleotide_ORF_translation
Type: Taverna 1
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Description
From a nucleotide sequence get the protein translations of the open reading frames (stop to stop) that are longer than a specifed minimum length.
EMBOSS getorf is used to find the ORFs and perform the translations. The getorf tool is accessed via Soaplab (see http://www.ebi.ac.uk/Tools/webservices/soaplab/overview).
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Original Uploader |
Created: 06/06/08 @ 05:57:31
Credits:
License: Creative Commons Attribution 3.0 Unported License
Given a structure or structure entry identifer (e.g. PDB:1crn), return the structure in PDB format.
If a structure identifier, in database:identifier format, is input the EBI's WSDbfetch web service (see http://www.ebi.ac.uk/Tools/webservices/services/dbfetch) is used to retrive the structure in PDB format. Otherwise the input is assumed to be a formated structure and is passed through to the output.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 379 times | Downloaded: 37 times Tags (8): |
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Original Uploader |
Created: 01/06/08 @ 14:15:12
Credits:
License: Creative Commons Attribution 3.0 Unported License
Given a sequence or sequence entry identifer (e.g. uniprot:wap_rat), return the sequence in fasta format.
If a sequence identifier, in database:identifier format, is input the EBI's WSDbfetch web service (see http://www.ebi.ac.uk/Tools/webservices/services/dbfetch) is used to retrive the sequence in fasta format. Otherwise the input is assumed to be a sequence and if passed through the Soaplab EMBOSS seqret service to force the sequence into fasta format.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 145 times | Downloaded: 60 times Tags (6): |
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Non-Information Resource URI: http://www.myexperiment.org/workflows/227
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