Sequence_or_ID_or_GI

Created: 2008-06-07 16:58:14

Get a sequence in fasta format given one of:

  1. An NCBI GI number (e.g. 75251068).
  2. An entry identifier in database:identifier format (e.g. uniprot:Q96247).

3. A sequence entry in a format supported by EMBOSS seqret.

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Workflow NCBI_QBLAST (2)

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Perform an NCBI BLAST sequence similarity search using NCBI's QBLAST service (see http://www.ncbi.nlm.nih.gov/BLAST/Doc/urlapi.html). The query sequence, database to search and BLAST program to use are inputs, the other parameters for the search are allowed to default.

Created: 2008-06-07 | Last updated: 2008-06-07

Credits: User Hamish McWilliam

Workflow tRNAscan (1)

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Search a nucleotide sequence for tRNA genes using the tRNAscan-SE tool (see http://wiki.bioinformatics.org/TRNAscan-SE). This workflow uses the tRNAscan service at VBI PathPort (see http://pathport.vbi.vt.edu/services/#predict_7).

Created: 2008-06-28

Credits: User Hamish McWilliam

Attributions: Workflow Sequence_or_ID_or_GI